Dongbo Bu

2.7k citations

88 papers · 972 · h-index 19

Impact in

Molecular Biology top 10%
- Protein Structure and Dynamics
- Machine Learning in Bioinformatics
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- RNA modifications and cancer
- RNA Research and Splicing
Aging

Papers in

Molecular Biology 58
- Protein Structure and Dynamics 26
- Machine Learning in Bioinformatics 16
- Genomics and Phylogenetic Studies 13
- Glycosylation and Glycoproteins Research 8
- RNA and protein synthesis mechanisms 8
Artificial Intelligence 10
- Algorithms and Data Compression 5

Co-authors: Shiwei Sun (41 shared papers)Jinbo Xu (9 shared papers)Jianwei Zhu (11 shared papers)Shuai Cheng Li (15 shared papers)Wei‐Mou Zheng (13 shared papers)Haicang Zhang (13 shared papers)Runsheng Chen (13 shared papers)Fusong Ju (11 shared papers)
Journals: BMC Bioinformatics (13 papers)Bioinformatics (11 papers)IEEE/ACM Transactions on Computational Biology and Bioinformatics (4 papers)Analytical Chemistry (3 papers)Journal of Computational Biology (2 papers)
Partner nations: China United States Canada

In The Last Decade

Dongbo Bu

82 papers receiving 945 citations

Peers

Replace Shiwei Sun with:

Shiwei Sun China

Ruchira S. Datta United States

Alberto J. M. Martín Chile

Kelly P. Brock United States

Vincent Schächter France

Sebastian Bittrich United States

Ioannis Iliopoulos Greece

Hammad Naveed United States

Arnaud Céol Italy

Maricel G. Kann United States

Dongbo Bu relative to Shiwei Sun China Shiwei Sun's profile →

Citations per field

00.5×1.5×2.1×

Shiwei Sun · 1×

×0.9 725/806

MB

×0.6 12/20

AGING

×1.1 92/82

SPECT

×0.7 80/112

CTM

×0.6 57/95

CR

Citations per year

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Countries citing papers authored by Dongbo Bu

Since Specialization

Citations

This map shows the geographic impact of Dongbo Bu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Dongbo Bu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Dongbo Bu more than expected).

Fields of papers citing papers by Dongbo Bu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Dongbo Bu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Dongbo Bu. The network helps show where Dongbo Bu may publish in the future.

Co-authors

The 25 scholars most cited alongside Dongbo Bu, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Dongbo Bu Line = papers co-authored together Dongbo Bu links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 88 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression Genome Research ·Wei Deng, Xiaopeng Zhu, Geir Skogerbø, Yi Zhao, Zhuo Fu, Yu Wang, Housheng He, Lun Cai, Hong Sun, Changning Liu, Biao Li, Baoyan Bai, Jie Wang, Dong Jia, Shiwei Sun, Hang He, Yan Cui, Yu Wang, Dongbo Bu, Runsheng Chen	2005	96
2	CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction Nature Communications ·Fusong Ju, Jianwei Zhu, Bin Shao, Lupeng Kong, Tie‐Yan Liu, Wei‐Mou Zheng, Dongbo Bu	2021	54
3	Protein threading using residue co-variation and deep learning Bioinformatics ·Jianwei Zhu, Sheng Wang, Dongbo Bu, Jinbo Xu	2018	51
4	Fragment‐HMM: A new approach to protein structure prediction Protein Science ·Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li	2008	50
5	Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts Bioinformatics ·Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei‐Mou Zheng, Dongbo Bu	2017	36
6	MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control Trends in Genetics ·Yi Zhao, Shunmin He, Changning Liu, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen	2008	33
7	FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space Bioinformatics ·Xiang Chen, Si‐Min He, Dongbo Bu, Fa Zhang, Zhiyong Wang, Runsheng Chen, Wen Gao	2008	32
8	FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition Bioinformatics ·Chao Wang, Haicang Zhang, Wei‐Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu	2015	31
9	DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning Bioinformatics ·Hao Chen, Dipan Shaw, Jianyang Zeng, Dongbo Bu, Tao Jiang	2019	28
10	Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms Genomics Proteomics & Bioinformatics ·Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei‐Mou Zheng, Dongbo Bu	2023	28
11	The effect of N-glycosylation of SARS-CoV-2 spike protein on the virus interaction with the host cell ACE2 receptor iScience ·Chuncui Huang, Zeshun Tan, Keli Zhao, Wenjun Zou, Hui Wang, Huanyu Gao, Shiwei Sun, Dongbo Bu, Wengang Chai, Yan Li	2021	27
12	Toward Automated Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Intelligent Precursor Selection Analytical Chemistry ·Shiwei Sun, Chuncui Huang, Yaojun Wang, Yaming Liu, Jingwei Zhang, Jinyu Zhou, Feng Gao, Fei Yang, Runsheng Chen, Barbara Mulloy, Wengang Chai, Yan Li, Dongbo Bu	2018	25
13	Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm FEBS Letters ·Shiwei Sun, Yi Zhao, Yishan Jiao, Yifei Yin, Lun Cai, Yong Zhang, Hongchao Lu, Runsheng Chen, Dongbo Bu	2006	23
14	Improving consensus contact prediction via server correlation reduction BMC Structural Biology ·Xin Gao, Dongbo Bu, Jinbo Xu, Ming Li	2009	21
15	Accurate and efficient protein sequence design through learning concise local environment of residues Bioinformatics ·Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei‐Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu	2023	19
16	EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction Bioinformatics ·Xiaoyang Hou, Yu Wang, Dongbo Bu, Yaojun Wang, Shiwei Sun	2023	19
17	Date of origin of the SARS coronavirus strains BMC Infectious Diseases ·Hongchao Lu, Yi Zhao, Jingfen Zhang, Yuelan Wang, Wei Li, Xiaopeng Zhu, Shiwei Sun, Jingyi Xu, Lunjiang Ling, Lun Cai, Dongbo Bu, Runsheng Chen	2004	18
18	Deriving the Probabilities of Water Loss and Ammonia Loss for Amino Acids from Tandem Mass Spectra Journal of Proteome Research ·Shiwei Sun, Chungong Yu, Yantao Qiao, Yu Lin, Gongjin Dong, Changning Liu, Jingfen Zhang, Zhuo Zhang, Jinjin Cai, Hong Zhang, Dongbo Bu	2007	18
19	MS-Simulator: Predicting Y-Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions Journal of Proteome Research ·Shiwei Sun, Fuquan Yang, Qing Yang, Hong Zhang, Yaojun Wang, Dongbo Bu, Bin Ma	2012	18
20	Parameterized BLOSUM Matrices for Protein Alignment IEEE/ACM Transactions on Computational Biology and Bioinformatics ·Dandan Song, Jiaxing Chen, Guang Chen, Ning Li, Li Jin, Jun Fan, Dongbo Bu, Shuai Cheng Li	2014	18

About Dongbo Bu

Dongbo Bu is a scholar working on Molecular Biology, Artificial Intelligence, Spectroscopy, Materials Chemistry and Computational Theory and Mathematics, having authored 88 papers that have together received 972 indexed citations. Recurring topics across this work include Protein Structure and Dynamics (26 papers), Machine Learning in Bioinformatics (16 papers), Genomics and Phylogenetic Studies (13 papers), Glycosylation and Glycoproteins Research (8 papers), Enzyme Structure and Function (8 papers), RNA and protein synthesis mechanisms (8 papers), Advanced Proteomics Techniques and Applications (7 papers) and Algorithms and Data Compression (5 papers). The work is most often cited by research in Molecular Biology (725 citations), Aging (12 citations), Spectroscopy (92 citations), Computational Theory and Mathematics (80 citations) and Cancer Research (57 citations). Dongbo Bu has collaborated with scholars based in China, United States and Canada. Frequent co-authors include Shiwei Sun, Jinbo Xu, Jianwei Zhu, Shuai Cheng Li, Wei‐Mou Zheng, Haicang Zhang, Runsheng Chen, Fusong Ju, Ming Li and Sheng Wang. Their work appears in journals such as BMC Bioinformatics, Bioinformatics, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Analytical Chemistry and Journal of Computational Biology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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