Yan Cui

4.9k citations

144 papers · 3.7k · h-index 31

Impact in

Cancer Research top 2%
- MicroRNA in disease regulation
- Cancer-related molecular mechanisms research
Aging top 5%

Papers in

Molecular Biology 77
- Gene expression and cancer classification 22
- Bioinformatics and Genomic Networks 20
- RNA Research and Splicing 11
- Machine Learning in Bioinformatics 8
- Gene Regulatory Network Analysis 7
Cancer Research 19
- MicroRNA in disease regulation 16
- Cancer-related molecular mechanisms research 11

Co-authors: Anindya Bhattacharya (15 shared papers)Jesse D. Ziebarth (16 shared papers)Li Bao (3 shared papers)Mi Zhou (9 shared papers)Wing Hung Wong (7 shared papers)Robert W. Williams (12 shared papers)Nishchal K. Verma (11 shared papers)Xiaogang Guo (3 shared papers)
Journals: Nucleic Acids Research (9 papers)PLoS ONE (7 papers)Scientific Reports (4 papers)Neurocomputing (3 papers)Human Molecular Genetics (3 papers)
Partner nations: China United States India

In The Last Decade

Yan Cui

132 papers receiving 3.6k citations

Peers

Replace Pingzhao Hu with:

Pingzhao Hu Canada

Kyoung‐Jae Won United States

Katriina Aalto‐Setälä Finland

Daniele Merico Canada

Tim Beißbarth Germany

Naoki Kobayashi Japan

Yidong Chen United States

Robert B. Scharpf United States

Aristotelis Tsirigos United States

Hugo Ceulemans Belgium

Yan Cui relative to Pingzhao Hu Canada Pingzhao Hu's profile →

Citations per field

00.5×2×4×5.1×

Pingzhao Hu · 1×

×1.4 783/578

CR

×5.1 66/13

AGING

×1.0 2k/2k

MB

×1.0 33/33

HI

×0.8 518/632

GENET

Citations per year

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Countries citing papers authored by Yan Cui

Since Specialization

Citations

This map shows the geographic impact of Yan Cui's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Yan Cui with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Yan Cui more than expected).

Fields of papers citing papers by Yan Cui

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Yan Cui. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Yan Cui. The network helps show where Yan Cui may publish in the future.

Co-authors

The 25 scholars most cited alongside Yan Cui, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Yan Cui Line = papers co-authored together Yan Cui links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 144 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways Nucleic Acids Research ·Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui	2013	270
2	nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms Nucleic Acids Research ·Li Bao, Mi Zhou, Yan Cui	2005	186
3	circ-Sirt1 controls NF-κB activation via sequence-specific interaction and enhancement of SIRT1 expression by binding to miR-132/212 in vascular smooth muscle cells Nucleic Acids Research ·Peng Kong, Yuan Yu, Lu Wang, Yong‐Qing Dou, Xuhui Zhang, Yan Cui, Haiyue Wang, Yu-Tao Yong, (unknown), Haijuan Hu, Wei Cui, Shao-Guang Sun, Binghui Li, Fan Zhang, Mei Han	2019	156
4	Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis Development ·Xiaogang Guo, Tiejun Zhang, Zheng Hu, Yanqi Zhang, Zhaoying Shi, Qinhu Wang, Yan Cui, Fengqin Wang, Hui Zhao, Yonglong Chen	2014	144
5	CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization Nucleic Acids Research ·Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui	2012	139
6	PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits Nucleic Acids Research ·Li Bao, Mi Zhou, Ligang Wu, L. Lü, Dan Goldowitz, Robert W. Williams, Yan Cui	2006	131
7	Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information Computer applications in the biosciences ·Li Bao, Yan Cui	2005	126
8	SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions Nucleic Acids Research ·Anindya Bhattacharya, Yan Cui	2015	116
9	Serine metabolism orchestrates macrophage polarization by regulating the IGF1–p38 axis Cellular and Molecular Immunology ·Xiao Shan, Penghui Hu, Lina Ni, Long Shen, Yanan Zhang, Zemin Ji, Yan Cui, Meihua Guo, Haoan Wang, Liyuan Ran, Kun Yang, Ting Wang, Lei Wang, Bin Chen, Zhi Yao, Yingjie Wu, Qiujing Yu	2022	113
10	PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits Nucleic Acids Research ·Jesse D. Ziebarth, Anindya Bhattacharya, Alon Chen, Yan Cui	2011	112
11	Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks IEEE/ACM Transactions on Computational Biology and Bioinformatics ·Rahul K. Sevakula, Vikas Singh, Nishchal K. Verma, Chandan Kumar, Yan Cui	2018	105
12	Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression Genome Research ·Wei Deng, Xiaopeng Zhu, Geir Skogerbø, Yi Zhao, Zhuo Fu, Yu Wang, Housheng He, Lun Cai, Hong Sun, Changning Liu, Biao Li, Baoyan Bai, Jie Wang, Dong Jia, Shiwei Sun, Hang He, Yan Cui, Yu Wang, Dongbo Bu, Runsheng Chen	2005	97
13	Targeted gene disruption in Xenopus laevis using CRISPR/Cas9 Cell & Bioscience ·Fengqin Wang, Zhaoying Shi, Yan Cui, Xiaogang Guo, Yun‐Bo Shi, Yonglong Chen	2015	96
14	CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators Nucleic Acids Research ·Li Bao, Mi Zhou, Yan Cui	2007	93
15	Expression of decorin, biglycan, and collagen type I in human renal fibrosing disease Kidney International ·Michael B. Stokes, Susann Holler, Yan Cui, Kelly L. Hudkins, Frank Eitner, Agnes B. Fogo, Charles E. Alpers	2000	92
16	Deep transfer learning for reducing health care disparities arising from biomedical data inequality Nature Communications ·Yan Gao, Yan Cui	2020	84
17	Immuno-stimulating properties of diosgenyl saponins isolated from Paris polyphylla Bioorganic & Medicinal Chemistry Letters ·Xiufeng Zhang, Yan Cui, Jiajun Huang, Yazhou Zhang, Zhou Nie, Lan‐Fen Wang, Bao-zhen Yan, Yalin Tang, Yang Liu	2007	74
18	Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes Proceedings of the National Academy of Sciences ·Yan Cui, Wing Hung Wong, Erich Bornberg‐Bauer, Hue Sun Chan	2002	73
19	SomamiR: a database for somatic mutations impacting microRNA function in cancer Nucleic Acids Research ·Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui	2012	69
20	Inferring gene transcriptional modulatory relations: a genetical genomics approach Human Molecular Genetics ·Hongqiang Li, Lu Lu, Kenneth F. Manly, Elissa J. Chesler, Lei Bao, Jintao Wang, Mi Zhou, Robert W. Williams, Yan Cui	2005	67

About Yan Cui

Yan Cui is a scholar working on Molecular Biology, Cancer Research, Genetics, Computer Vision and Pattern Recognition and Artificial Intelligence, having authored 144 papers that have together received 3.7k indexed citations. Recurring topics across this work include Gene expression and cancer classification (22 papers), Bioinformatics and Genomic Networks (20 papers), MicroRNA in disease regulation (16 papers), RNA Research and Splicing (11 papers), Cancer-related molecular mechanisms research (11 papers), Genetic Mapping and Diversity in Plants and Animals (9 papers), Machine Learning in Bioinformatics (8 papers) and Gene Regulatory Network Analysis (7 papers). The work is most often cited by research in Cancer Research (783 citations), Aging (66 citations), Molecular Biology (2.2k citations), Health Informatics (33 citations) and Genetics (518 citations). Yan Cui has collaborated with scholars based in China, United States and India. Frequent co-authors include Anindya Bhattacharya, Jesse D. Ziebarth, Li Bao, Mi Zhou, Wing Hung Wong, Robert W. Williams, Nishchal K. Verma, Xiaogang Guo, Zhaoying Shi and Fengqin Wang. Their work appears in journals such as Nucleic Acids Research, PLoS ONE, Scientific Reports, Neurocomputing and Human Molecular Genetics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Yan Cui

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About Yan Cui

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