Si‐Min He

5.4k citations

77 papers · 3.5k · 2 hit papers · h-index 29

Impact in

Spectroscopy top 0.5%
- Advanced Proteomics Techniques and Applications
- Mass Spectrometry Techniques and Applications
Molecular Biology top 2%
- Metabolomics and Mass Spectrometry Studies
- Glycosylation and Glycoproteins Research
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Machine Learning in Bioinformatics
- RNA Research and Splicing

Papers in

Spectroscopy 45
- Advanced Proteomics Techniques and Applications 43
- Mass Spectrometry Techniques and Applications 34
Molecular Biology 46
- Metabolomics and Mass Spectrometry Studies 14
- Machine Learning in Bioinformatics 10
- Genomics and Phylogenetic Studies 9
- Glycosylation and Glycoproteins Research 6

Co-authors: Hao Chi (35 shared papers)Meng‐Qiu Dong (19 shared papers)Rui-Xiang Sun (24 shared papers)Wen‐Feng Zeng (7 shared papers)Wenfeng Zeng (10 shared papers)Chao Liu (13 shared papers)Yan Fu (16 shared papers)Sheng‐Bo Fan (9 shared papers)
Journals: Journal of Proteome Research (7 papers)Rapid Communications in Mass Spectrometry (5 papers)Analytical Chemistry (5 papers)Bioinformatics (4 papers)Molecular & Cellular Proteomics (4 papers)
Partner nations: China Canada United States

In The Last Decade

Si‐Min He

72 papers receiving 3.4k citations

Si‐Min He's Hit Papers

align trajectories log scale

A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 2019 · 355 citations

What are hit papers?

Paper score: A paper's citations measured against the top-1% bar of its own field and year: the square root of citations ÷ bar, so 1 means right at the bar and 2 means four times its citations. The bar blends the citation counts that enter the top 1% of the paper's subfields in its year (weighted 89.5%), of those subfields over all years (0.5%) and of its year across all fields (10%); a subfield and year with fewer than 400 papers takes its year's bar. Papers from 2026 are not scored yet: in an unfinished year, when a paper appeared matters more than how it is cited.

Hit paper: A paper cited at least 1.5× the top-1% bar of its field and year: a paper score of at least √1.5.

2019 Nature Communications
2012 Nature Methods

Peers

Countries citing papers authored by Si‐Min He

Since Specialization

Citations

This map shows the geographic impact of Si‐Min He's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Si‐Min He with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Si‐Min He more than expected).

Fields of papers citing papers by Si‐Min He

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Si‐Min He. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Si‐Min He. The network helps show where Si‐Min He may publish in the future.

Co-authors

The 25 scholars most cited alongside Si‐Min He, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Si‐Min He Line = papers co-authored together Si‐Min He links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 77 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Identification of cross-linked peptides from complex samples Nature Methods ·Bing Yang, Yanjie Wu, Ming Zhu, Sheng‐Bo Fan, Jinzhong Lin, Kun Zhang, Shuang Li, Hao Chi, Yuxin Li, Haifeng Chen, Shukun Luo, Yue‐He Ding, Leheng Wang, Zhiqi Hao, Li‐Yun Xiu, She Chen, Keqiong Ye, Si‐Min He, Meng‐Qiu Dong Hit paper breakdown →	2012	463
2	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides Nature Communications ·Zhen-Lin Chen, Jia‐Ming Meng, Yong Cao, Jili Yin, Run-Qian Fang, Sheng‐Bo Fan, Chao Liu, Wenfeng Zeng, Yue‐He Ding, Dan Tan, Long Wu, Wenjing Zhou, Hao Chi, Rui-Xiang Sun, Meng‐Qiu Dong, Si‐Min He Hit paper breakdown →	2019	355
3	Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine Nature Biotechnology ·Hao Chi, Chao Liu, Hao Yang, Wenfeng Zeng, Long Wu, Wenjing Zhou, Ruimin Wang, Xiu-Nan Niu, Yue‐He Ding, Yao Zhang, Zhaowei Wang, Zhenlin Chen, Rui-Xiang Sun, Tao Liu, Guangming Tan, Meng‐Qiu Dong, Ping Xu, Zhang Pei-heng, Si‐Min He	2018	308
4	pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry Rapid Communications in Mass Spectrometry ·Leheng Wang, Dequan Li, Yan Fu, Hai‐Peng Wang, Jingfen Zhang, Zuo‐Fei Yuan, Rui‐Xiang Sun, Rong Zeng, Si‐Min He, Wen Gao	2007	181
5	pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning Analytical Chemistry ·Xie‐Xuan Zhou, Wen‐Feng Zeng, Hao Chi, Chunjie Luo, Chao Liu, Jianfeng Zhan, Si‐Min He, Zhi-Fei Zhang	2017	179
6	Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3 Nature Methods ·Wen‐Feng Zeng, Weiqian Cao, Mingqi Liu, Si‐Min He, Pengyuan Yang	2021	159
7	pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry Computer applications in the biosciences ·Dongxiang Li, Yan Fu, Ren Sun, Charles X. Ling, Yanjie Wei, Hui Zhou, Rong Zeng, Qiang Yang, Si‐Min He, Wen Gao	2005	138
8	pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra Journal of Proteome Research ·Hao Chi, Rui-Xiang Sun, Bing Yang, Chun‐Qing Song, Leheng Wang, Chao Liu, Yan Fu, Zuo‐Fei Yuan, Haipeng Wang, Si‐Min He, Meng‐Qiu Dong	2010	137
9	Mapping native disulfide bonds at a proteome scale Nature Methods ·Shan Lu, Sheng‐Bo Fan, Bing Yang, Yuxin Li, Jia‐Ming Meng, Long Wu, Pin Li, Kun Zhang, Meijun Zhang, Yan Fu, Jincai Luo, Rui-Xiang Sun, Si‐Min He, Meng‐Qiu Dong	2015	132
10	pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3 Scientific Reports ·Wen‐Feng Zeng, Mingqi Liu, Yang Zhang, Jianqiang Wu, Pan Fang, Chao Peng, Aiying Nie, Guoquan Yan, Weiqian Cao, Chao Liu, Hao Chi, Rui-Xiang Sun, Catherine C. L. Wong, Si‐Min He, Pengyuan Yang	2016	84
11	pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass Spectra Journal of Proteome Research ·Hao Chi, Haifeng Chen, Kun He, Long Wu, Bing Yang, Rui-Xiang Sun, Jianyun Liu, Wenfeng Zeng, Chun‐Qing Song, Si‐Min He, Meng‐Qiu Dong	2012	83
12	A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins Molecular & Cellular Proteomics ·Wei Jia, Zhuang Lu, Yan Fu, Haipeng Wang, Leheng Wang, Hao Chi, Zuo‐Fei Yuan, Zhaobin Zheng, Lina Song, Huanhuan Han, Yimin Liang, Jinglan Wang, Yun Cai, Yukui Zhang, Yulin Deng, Wantao Ying, Si‐Min He, Xiaohong Qian	2009	81
13	MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning Analytical Chemistry ·Wen‐Feng Zeng, Xie‐Xuan Zhou, Wenjing Zhou, Hao Chi, Jianfeng Zhan, Si‐Min He	2019	75
14	Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate Bioinformatics ·Ding Ping Ye, Yan Fu, Rui-Xiang Sun, Haipeng Wang, Zuo‐Fei Yuan, Hao Chi, Si‐Min He	2010	73
15	pQuant Improves Quantitation by Keeping out Interfering Signals and Evaluating the Accuracy of Calculated Ratios Analytical Chemistry ·Chao Liu, Chun‐Qing Song, Zuo‐Fei Yuan, Yan Fu, Hao Chi, Leheng Wang, Sheng‐Bo Fan, Kun Zhang, Wenfeng Zeng, Si‐Min He, Meng‐Qiu Dong, Rui-Xiang Sun	2014	70
16	pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework Bioinformatics ·Hao Yang, Hao Chi, Wenfeng Zeng, Wenjing Zhou, Si‐Min He	2019	63
17	Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers Nature Communications ·Alexander X. Jones, Yong Cao, Yuliang Tang, Jianhua Wang, Yue‐He Ding, Hui Tan, Zhenlin Chen, Run-Qian Fang, Jili Yin, Rongchang Chen, Xing Quan Zhu, Yang She, Niu Huang, Feng Shao, Keqiong Ye, Rui-Xiang Sun, Si‐Min He, Xiaoguang Lei, Meng‐Qiu Dong	2019	57
18	pFind–Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data Journal of Proteomics ·Hao Chi, Kun He, Bing Yang, Zhen Chen, Rui-Xiang Sun, Sheng‐Bo Fan, Kun Yuan Zhang, Chao Liu, Zuo‐Fei Yuan, Quan-Hui Wang, Siqi Liu, Meng‐Qiu Dong, Si‐Min He	2015	55
19	pTop 1.0: A High-Accuracy and High-Efficiency Search Engine for Intact Protein Identification Analytical Chemistry ·Rui-Xiang Sun, Lan E Luo, Long Wu, Ruimin Wang, Wenfeng Zeng, Hao Chi, Chao Liu, Si‐Min He	2016	53
20	Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin) Proceedings of the National Academy of Sciences ·Yanmei Zhao, Wei Sun, Pan Zhang, Hao Chi, Meijun Zhang, Chun‐Qing Song, Xuan Ma, Yunlong Shang, Bin Wang, Youqiao Hu, Zhiqi Hao, Andreas F. R. Hühmer, Fanxia Meng, Steven W. L’Hernault, Si‐Min He, Meng‐Qiu Dong, Long Miao	2012	47

About Si‐Min He

Si‐Min He is a scholar working on Spectroscopy, Molecular Biology, Computer Networks and Communications, Signal Processing and Computer Vision and Pattern Recognition, having authored 77 papers that have together received 3.5k indexed citations. Recurring topics across this work include Advanced Proteomics Techniques and Applications (43 papers), Mass Spectrometry Techniques and Applications (34 papers), Metabolomics and Mass Spectrometry Studies (14 papers), Machine Learning in Bioinformatics (10 papers), Genomics and Phylogenetic Studies (9 papers), Interconnection Networks and Systems (9 papers), Advancements in Battery Materials (7 papers) and Glycosylation and Glycoproteins Research (6 papers). The work is most often cited by research in Spectroscopy (1.7k citations), Molecular Biology (2.6k citations), Cell Biology (239 citations), Aging (23 citations) and Structural Biology (14 citations). Si‐Min He has collaborated with scholars based in China, Canada and United States. Frequent co-authors include Hao Chi, Meng‐Qiu Dong, Rui-Xiang Sun, Wen‐Feng Zeng, Wenfeng Zeng, Chao Liu, Yan Fu, Sheng‐Bo Fan, Yue‐He Ding and Wenjing Zhou. Their work appears in journals such as Journal of Proteome Research, Rapid Communications in Mass Spectrometry, Analytical Chemistry, Bioinformatics and Molecular & Cellular Proteomics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Si‐Min He

Si‐Min He's Hit Papers

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Fields of papers citing papers by Si‐Min He

All Works

About Si‐Min He

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