Ruth Y. Eberhardt

24.1k citations

28 papers · 14.2k · 5 hit papers · h-index 17

Impact in

Molecular Biology top 0.5%
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Plant Gene Expression Analysis
- RNA modifications and cancer
- Photosynthetic Processes and Mechanisms
Endocrinology top 1%

Papers in

Molecular Biology 13
- Genomics and Phylogenetic Studies 10
- Machine Learning in Bioinformatics 5
- RNA and protein synthesis mechanisms 4
Genetics 8
- Genomics and Rare Diseases 4
- Genomic variations and chromosomal abnormalities 3
- Genetics and Neurodevelopmental Disorders 2

Co-authors: Alex Bateman (12 shared papers)John Tate (6 shared papers)Sean R. Eddy (5 shared papers)ROBERT FINN (7 shared papers)Marco Punta (9 shared papers)Jaina Mistry (5 shared papers)Penelope Coggill (5 shared papers)Liisa Holm (2 shared papers)
Journals: BMC Bioinformatics (6 papers)Nucleic Acids Research (5 papers)Database (3 papers)Ultrasound in Obstetrics and Gynecology (2 papers)Genetics in Medicine (2 papers)
Partner nations: United Kingdom United States India

In The Last Decade

Ruth Y. Eberhardt

27 papers receiving 14.1k citations

Ruth Y. Eberhardt's Hit Papers

5 papers align trajectories log scale

The Pfam protein families database: towards a more sustainable future 2015 · 4.2k citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2015 Nucleic Acids Research
2014 Nucleic Acids Research
2013 Nucleic Acids Research
2012 Nucleic Acids Research
2011 Nucleic Acids Research

Peers

Countries citing papers authored by Ruth Y. Eberhardt

Since Specialization

Citations

This map shows the geographic impact of Ruth Y. Eberhardt's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ruth Y. Eberhardt with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ruth Y. Eberhardt more than expected).

Fields of papers citing papers by Ruth Y. Eberhardt

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ruth Y. Eberhardt. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ruth Y. Eberhardt. The network helps show where Ruth Y. Eberhardt may publish in the future.

Co-authors

The 25 scholars most cited alongside Ruth Y. Eberhardt, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ruth Y. Eberhardt Line = papers co-authored together Ruth Y. Eberhardt links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 28 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Pfam: the protein families database Nucleic Acids Research ·ROBERT FINN, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John Tate, Marco Punta Hit paper breakdown →	2013	4897
2	The Pfam protein families database: towards a more sustainable future Nucleic Acids Research ·ROBERT FINN, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Jaina Mistry, Alex Mitchell, Simon Potter, Marco Punta, Matloob Qureshi, Amaia Sangrador‐Vegas, Gustavo A Salazar, John Tate, Alex Bateman Hit paper breakdown →	2015	4187
3	The Pfam protein families database Nucleic Acids Research ·Marco Punta, Penny Coggill, Ruth Y. Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Sofia K. Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, ROBERT FINN Hit paper breakdown →	2011	3072
4	Rfam 12.0: updates to the RNA families database Nucleic Acids Research ·Eric P. Nawrocki, Sarah Burge, Alex Bateman, Jennifer Daub, Ruth Y. Eberhardt, Sean R. Eddy, Evan Floden, Paul P. Gardner, Thomas A. Jones, John Tate, ROBERT FINN Hit paper breakdown →	2014	831
5	Rfam 11.0: 10 years of RNA families Nucleic Acids Research ·Sarah Burge, Jennifer Daub, Ruth Y. Eberhardt, John Tate, Lars Barquist, Eric P. Nawrocki, Sean R. Eddy, Paul P. Gardner, Alex Bateman Hit paper breakdown →	2012	639
6	New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily BMC Bioinformatics ·Christine B. Trame, Yuanyuan Chang, Herbert L. Axelrod, Ruth Y. Eberhardt, Penelope Coggill, Marco Punta, Neil D. Rawlings	2014	65
7	COngenital heart disease and the Diagnostic yield with Exome sequencing (CODE) study: prospective cohort study and systematic review Ultrasound in Obstetrics and Gynecology ·Fionnuala Mone, Ruth Y. Eberhardt, R. Katie Morris, Matthew E. Hurles, DJ McMullan, Eamonn R. Maher, Jenny Lord, Lyn S. Chitty, Jessica L. Giordano, Ronald J. Wapner, Mark D. Kilby, (unknown)	2020	54
8	Filling out the structural map of the NTF2-like superfamily BMC Bioinformatics ·Ruth Y. Eberhardt, Yuanyuan Chang, Alex Bateman, Alexey G. Murzin, Herbert L. Axelrod, W.C. Hwang, L. Aravind	2013	52
9	Characterization of a cellulosome dockerin domain from the anaerobic fungus Piromyces equi. Nature Structural Biology ·S. Raghothama, Ruth Y. Eberhardt, P. J. Simpson, Darran J. Wigelsworth, Peter White, Geoffrey P. Hazlewood, Tibor Nagy, H.J. Gilbert, Michael P. Williamson	2001	45
10	Molecular autopsy by trio exome sequencing (ES) and postmortem examination in fetuses and neonates with prenatally identified structural anomalies Genetics in Medicine ·E Quinlan-Jones, Jenny Lord, Denise Williams, S. Hamilton, Tamás Marton, Ruth Y. Eberhardt, Gabriele Rinck, Elena Prigmore, Rebecca Keelagher, Dominic McMullan, Eamonn R. Maher, Matthew E. Hurles, Mark D. Kilby	2018	42
11	Primary sequence and enzymic properties of two modular endoglucanases, Cel5A and Cel45A, from the anaerobic fungus Piromyces equi The EMBL accession numbers for the sequences reported in this paper are AJ277482 and AJ277483. Microbiology ·Ruth Y. Eberhardt, Harry J. Gilbert, Geoffrey P. Hazlewood	2000	42
12	AntiFam: a tool to help identify spurious ORFs in protein annotation Database ·Ruth Y. Eberhardt, Daniel H. Haft, Marco Punta, María Martin, Claire O’Donovan, Alex Bateman	2012	36
13	Fetal hydrops and the Incremental yield of Next‐generation sequencing over standard prenatal Diagnostic testing (FIND) study: prospective cohort study and meta‐analysis Ultrasound in Obstetrics and Gynecology ·Fionnuala Mone, Ruth Y. Eberhardt, Matthew E. Hurles, Dominic McMullan, Eamonn R. Maher, Jenny Lord, Lyn S. Chitty, Esther Dempsey, Tessa Homfray, Jessica L. Giordano, Ronald J. Wapner, Luming Sun, Teresa N. Sparks, Mary E. Norton, Mark D. Kilby	2021	35
14	Rfam: Annotating Families of Non-Coding RNA Sequences Methods in molecular biology ·Jennifer Daub, Ruth Y. Eberhardt, John Tate, Sarah Burge	2014	34
15	Development and evaluation of ELISA procedures to detect antibodies against the major envelope protein (GL) of equine arteritis virus Journal of Virological Methods ·Josephine Nugent, Robert Sinclair, Antoine A.F. DeVries, Ruth Y. Eberhardt, Javier Castillo‐Olivares, (unknown), Peter J. M. Rottier, J. A. Mumford	2000	33
16	Fetal central nervous system anomalies: When should we offer exome sequencing? Prenatal Diagnosis ·Caitlin Baptiste, Rhiannon Mellis, Vimla S. Aggarwal, Jenny Lord, Ruth Y. Eberhardt, Mark D. Kilby, Eamonn R. Maher, Ronald J. Wapner, Jessica L. Giordano, Lyn S. Chitty	2022	29
17	The challenge of increasing Pfam coverage of the human proteome Database ·Jaina Mistry, Penny Coggill, Ruth Y. Eberhardt, Antonio Deiana, Andrea Giansanti, ROBERT FINN, Alex Bateman, Marco Punta	2013	24
18	Detecting cryptic clinically relevant structural variation in exome-sequencing data increases diagnostic yield for developmental disorders The American Journal of Human Genetics ·Eugene J. Gardner, Alejandro Sifrim, Sarah Lindsay, Elena Prigmore, Diana Rajan, Petr Danecek, Giuseppe Gallone, Ruth Y. Eberhardt, Hilary C. Martin, Caroline F. Wright, David Fitzpatrick, Helen V. Firth, Matthew E. Hurles	2021	13
19	LUD, a new protein domain associated with lactate utilization BMC Bioinformatics ·W.C. Hwang, Constantina Bakolitsa, Marco Punta, Penelope Coggill, Alex Bateman, Herbert L. Axelrod, Neil D. Rawlings, Mayya Sedova, Scott N. Peterson, Ruth Y. Eberhardt, L. Aravind, Jaime Pascual, Adam Godzik	2013	13
20	Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase BMC Bioinformatics ·Anna Sheydina, Ruth Y. Eberhardt, Daniel J. Rigden, Yuanyuan Chang, Zhanwen Li, Christian C Zmasek, Herbert L. Axelrod, Adam Godzik	2014	12

About Ruth Y. Eberhardt

Ruth Y. Eberhardt is a scholar working on Molecular Biology, Genetics, Spectroscopy, Infectious Diseases and Oncology, having authored 28 papers that have together received 14.2k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (10 papers), Advanced Proteomics Techniques and Applications (5 papers), Machine Learning in Bioinformatics (5 papers), Genomics and Rare Diseases (4 papers), RNA and protein synthesis mechanisms (4 papers), Genomic variations and chromosomal abnormalities (3 papers), Genetics and Neurodevelopmental Disorders (2 papers) and Peptidase Inhibition and Analysis (2 papers). The work is most often cited by research in Molecular Biology (8.7k citations), Endocrinology (500 citations), Plant Science (3.6k citations), Ecology (1.9k citations) and Biotechnology (597 citations). Ruth Y. Eberhardt has collaborated with scholars based in United Kingdom, United States and India. Frequent co-authors include Alex Bateman, John Tate, Sean R. Eddy, ROBERT FINN, Marco Punta, Jaina Mistry, Penelope Coggill, Liisa Holm, Andreas Heger and Erik L. L. Sonnhammer. Their work appears in journals such as BMC Bioinformatics, Nucleic Acids Research, Database, Ultrasound in Obstetrics and Gynecology and Genetics in Medicine.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Ruth Y. Eberhardt

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In The Last Decade

Ruth Y. Eberhardt

Ruth Y. Eberhardt's Hit Papers

Peers

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Fields of papers citing papers by Ruth Y. Eberhardt

All Works

About Ruth Y. Eberhardt

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