Simon Rogers

7.5k citations

118 papers · 5.0k · 2 hit papers · h-index 37

Impact in

Human-Computer Interaction top 1%
- Interactive and Immersive Displays
Molecular Biology top 5%
- Metabolomics and Mass Spectrometry Studies
- Bioinformatics and Genomic Networks
- Genomics and Phylogenetic Studies
- Plant biochemistry and biosynthesis

Papers in

Molecular Biology 48
- Metabolomics and Mass Spectrometry Studies 28
- Bioinformatics and Genomic Networks 9
- Gene expression and cancer classification 7
- Genomics and Phylogenetic Studies 6
Human-Computer Interaction 10
- Interactive and Immersive Displays 8

Co-authors: Mark Girolami (17 shared papers)Justin J. J. van der Hooft (15 shared papers)Joe Wandy (18 shared papers)Michael Peter Barrett (6 shared papers)Karl E. Burgess (6 shared papers)Colin K. Campbell (6 shared papers)Rónán Daly (15 shared papers)Roderick Murray‐Smith (6 shared papers)
Journals: Bioinformatics (10 papers)PLoS Computational Biology (6 papers)Analytical Chemistry (3 papers)PLANT PHYSIOLOGY (3 papers)International Journal for Population Data Science (2 papers)
Partner nations: United Kingdom Netherlands United States

In The Last Decade

Simon Rogers

116 papers receiving 4.9k citations

Simon Rogers's Hit Papers

align trajectories log scale

Feature-based molecular networking in the GNPS analysis environment 2020 · 1.1k citations

What are hit papers?

Paper score: A paper's citations measured against the top-1% bar of its own field and year: the square root of citations ÷ bar, so 1 means right at the bar and 2 means four times its citations. The bar blends the citation counts that enter the top 1% of the paper's subfields in its year (weighted 89.5%), of those subfields over all years (0.5%) and of its year across all fields (10%); a subfield and year with fewer than 400 papers takes its year's bar. Papers from 2026 are not scored yet: in an unfinished year, when a paper appeared matters more than how it is cited.

Hit paper: A paper cited at least 1.5× the top-1% bar of its field and year: a paper score of at least √1.5.

2020 Nature Methods
2019 Metabolites

Peers

Countries citing papers authored by Simon Rogers

Since Specialization

Citations

This map shows the geographic impact of Simon Rogers's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simon Rogers with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simon Rogers more than expected).

Fields of papers citing papers by Simon Rogers

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simon Rogers. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simon Rogers. The network helps show where Simon Rogers may publish in the future.

Co-authors

The 25 scholars most cited alongside Simon Rogers, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Simon Rogers Line = papers co-authored together Simon Rogers links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 118 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Feature-based molecular networking in the GNPS analysis environment Nature Methods ·Louis-Félix Nothias-Scaglia, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst Hit paper breakdown →	2020	1132
2	MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools Metabolites ·Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo‐Rodríguez, Louis-Félix Nothias-Scaglia, Joe Wandy, Christopher S. Chen, Mingxun Wang, Simon Rogers Hit paper breakdown →	2019	296
3	Topic modeling for untargeted substructure exploration in metabolomics Proceedings of the National Academy of Sciences ·Justin J. J. van der Hooft, Joe Wandy, Michael Peter Barrett, Karl E. Burgess, Simon Rogers	2016	281
4	Estimating Dataset Size Requirements for Classifying DNA Microarray Data Journal of Computational Biology ·Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna E. Engle, Colin K. Campbell, Todd R. Golub, Jill P. Mesirov	2003	218
5	Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships PLoS Computational Biology ·Florian G. Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, F. Diblen, Simon Rogers, Justin J. J. van der Hooft	2021	167
6	Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors Neural Computation ·Mark Girolami, Simon Rogers	2006	142
7	A First Course in Machine Learning CERN Document Server (European Organization for Nuclear Research) ·Simon Rogers, Mark Girolami	2016	130
8	Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches Natural Product Reports ·Ahmed-Mehdi Beniddir, Kyo Bin Kang, Grégory Genta‐Jouve, Florian G. Huber, Simon Rogers, Justin J. J. van der Hooft	2021	122
9	Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models Bioinformatics ·Simon Rogers, Mark Girolami, Walter Kölch, Katrina M. Waters, Tao Liu, Brian D. Thrall, H. Steven Wiley	2008	112
10	A community resource for paired genomic and metabolomic data mining Nature Chemical Biology ·Michelle Schorn, Stefan Verhoeven, Lars Ridder, Florian G. Huber, Deepa D. Acharya, Alexander A. Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam	2021	107
11	Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry Bioinformatics ·Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael Peter Barrett, Simon Rogers	2017	89
12	A Bayesian regression approach to the inference of regulatory networks from gene expression data Computer applications in the biosciences ·Simon Rogers, Mark Girolami	2005	83
13	Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) ·Li Sun, Gerardo Aragón-Camarasa, Simon Rogers, Jan Paul Siebert	2015	77
14	Probabilistic assignment of formulas to mass peaks in metabolomics experiments Bioinformatics ·Simon Rogers, Richard A. Scheltema, Mark Girolami, Rainer Breitling	2008	74
15	Uncertain text entry on mobile devices ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) ·Daryl Weir, Henning Pohl, Simon Rogers, Keith Vertanen, Per Ola Kristensson	2014	73
16	The Latent Process Decomposition of cDNA Microarray Data Sets IEEE Transactions on Computational Biology and Bioinformatics ·Simon Rogers, Mark Girolami, Colin K. Campbell, Rainer Breitling	2005	73
17	matchms - processing and similarity evaluation of mass spectrometry data. The Journal of Open Source Software ·Florian G. Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Manuel Villanueva Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers	2020	71
18	Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra Faraday Discussions ·Simon Rogers, Cher Wei Ong, Joe Wandy, Madeleine Ernst, Lars Ridder, Justin J. J. van der Hooft	2019	62
19	A user-specific machine learning approach for improving touch accuracy on mobile devices VBN Forskningsportal (Aalborg Universitet) ·Daryl Weir, Simon Rogers, Roderick Murray‐Smith, Markus Löchtefeld	2012	62
20	Hierarchic Bayesian models for kernel learning Cambridge University Engineering Department Publications Database ·Mark Girolami, Simon Rogers	2005	58

About Simon Rogers

Simon Rogers is a scholar working on Molecular Biology, Human-Computer Interaction, Artificial Intelligence, Spectroscopy and Pharmacology, having authored 118 papers that have together received 5.0k indexed citations. Recurring topics across this work include Metabolomics and Mass Spectrometry Studies (28 papers), Gaussian Processes and Bayesian Inference (11 papers), Bioinformatics and Genomic Networks (9 papers), Interactive and Immersive Displays (8 papers), Microbial Natural Products and Biosynthesis (7 papers), Gene expression and cancer classification (7 papers), Analytical Chemistry and Chromatography (6 papers) and Genomics and Phylogenetic Studies (6 papers). The work is most often cited by research in Human-Computer Interaction (289 citations), Molecular Biology (2.5k citations), Pharmacology (567 citations), Spectroscopy (478 citations) and Biotechnology (190 citations). Simon Rogers has collaborated with scholars based in United Kingdom, Netherlands and United States. Frequent co-authors include Mark Girolami, Justin J. J. van der Hooft, Joe Wandy, Michael Peter Barrett, Karl E. Burgess, Colin K. Campbell, Rónán Daly, Roderick Murray‐Smith, Rainer Breitling and Florian G. Huber. Their work appears in journals such as Bioinformatics, PLoS Computational Biology, Analytical Chemistry, PLANT PHYSIOLOGY and International Journal for Population Data Science.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Simon Rogers's Hit Papers

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About Simon Rogers

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