Simon Lin

10.8k citations

77 papers · 5.7k · 3 hit papers · h-index 28

Impact in

Molecular Biology top 2%
- Epigenetics and DNA Methylation
- Genomics and Chromatin Dynamics
- Hedgehog Signaling Pathway Studies
- RNA modifications and cancer
- RNA Research and Splicing
- Gene expression and cancer classification
- Metabolomics and Mass Spectrometry Studies
- Bioinformatics and Genomic Networks
Cancer Research top 5%

Papers in

Molecular Biology 41
- Gene expression and cancer classification 12
- Bioinformatics and Genomic Networks 8
- Epigenetics and DNA Methylation 5
- Machine Learning in Bioinformatics 4
- RNA and protein synthesis mechanisms 4
- Fractal and DNA sequence analysis 3
- Metabolomics and Mass Spectrometry Studies 3
Oncology 6

Co-authors: Pan Du (22 shared papers)Warren A. Kibbe (11 shared papers)Michael R. Green (1 shared paper)Nathan D. Lawson (1 shared paper)David Lapointe (1 shared paper)Claude Gazin (1 shared paper)Hervé Pagès (1 shared paper)Lihua Julie Zhu (1 shared paper)
Journals: PLoS ONE (7 papers)Bioinformatics (4 papers)American Journal Of Pathology (2 papers)Molecular Cancer (1 paper)Journal of Thoracic and Cardiovascular Surgery (1 paper)
Partner nations: United States Austria Belgium

In The Last Decade

Simon Lin

76 papers receiving 5.6k citations

Simon Lin's Hit Papers

align trajectories log scale

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data 2010 · 790 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2010 BMC Bioinformatics
2008 Bioinformatics
2006 Bioinformatics

Peers

Countries citing papers authored by Simon Lin

Since Specialization

Citations

This map shows the geographic impact of Simon Lin's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simon Lin with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simon Lin more than expected).

Fields of papers citing papers by Simon Lin

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simon Lin. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simon Lin. The network helps show where Simon Lin may publish in the future.

Co-authors

The 25 scholars most cited alongside Simon Lin, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Simon Lin Line = papers co-authored together Simon Lin links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 77 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	lumi: a pipeline for processing Illumina microarray Bioinformatics ·Pan Du, Warren A. Kibbe, Simon Lin Hit paper breakdown →	2008	1638
2	ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data BMC Bioinformatics ·Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon Lin, David Lapointe, Michael R. Green Hit paper breakdown →	2010	790
3	Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching Bioinformatics ·Pan Du, Warren A. Kibbe, Simon Lin Hit paper breakdown →	2006	575
4	Model-based variance-stabilizing transformation for Illumina microarray data Nucleic Acids Research ·Simon Lin, Pan Du, Wolfgang Huber, Warren A. Kibbe	2008	415
5	Transcriptional profiling of the Sonic hedgehog response: A critical role for N-myc in proliferation of neuronal precursors Proceedings of the National Academy of Sciences ·Trudy G. Oliver, Linda L. Grasfeder, Audra L. Carroll, Constanze Kaiser, Christine L. Gillingham, Simon Lin, Rasika S. Wickramasinghe, Matthew P. Scott, Robert J. Wechsler‐Reya	2003	307
6	Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma Development ·Trudy G. Oliver, Tracy‐Ann Read, Jessica D. Kessler, Anriada Mehmeti, Jonathan F. Wells, Trang Huynh, Simon Lin, Robert J. Wechsler‐Reya	2005	194
7	Genome-Wide DNA Methylation Indicates Silencing of Tumor Suppressor Genes in Uterine Leiomyoma PLoS ONE ·Antònia Navarro, Ping Yin, Diana Monsivais, Simon Lin, Pan Du, Jian-Jun Wei, Serdar E. Bulun	2012	110
8	Genomics of Human Intracranial Aneurysm Wall Stroke ·Changbin Shi, Issam A. Awad, Nadereh Jafari, Simon Lin, Pan Du, Ziad A. Hage, Robert Shenkar, Christopher C. Getch, Markus Bredel, H. Hunt Batjer, Bernard R. Bendok	2009	101
9	GATA-2 Reinforces Megakaryocyte Development in the Absence of GATA-1 Molecular and Cellular Biology ·Zan Huang, Louis C. Doré, Zhe Li, Stuart H. Orkin, Gang Feng, Simon Lin, John D. Crispino	2009	86
10	The Early Growth Response Gene Egr2 (Alias Krox20) Is a Novel Transcriptional Target of Transforming Growth Factor-β that Is Up-Regulated in Systemic Sclerosis and Mediates Profibrotic Responses American Journal Of Pathology ·Feng Fang, Kohtaro Ooka, Swati Bhattachyya, Jun Wei, Minghua Wu, Pan Du, Simon Lin, Francesco Del Galdo, Carol Feghali‐Bostwick, John Varga	2011	77
11	Gene expression analysis of frontotemporal lobar degeneration of the motor neuron disease type with ubiquitinated inclusions Acta Neuropathologica ·Manjari Mishra, Tatjana Paunesku, Gayle E. Woloschak, Teepu Siddique, (unknown), Simon Lin, Kristin A. Greco, Eileen H. Bigio	2007	73
12	DNA methylation alterations in response to pesticide exposure in vitro Environmental and Molecular Mutagenesis ·Xiao Zhang, Andrew D. Wallace, Pan Du, Warren A. Kibbe, Nadereh Jafari, Hehuang Xie, Simon Lin, Andrea Baccarelli, Marcelo B. Soares, Lifang Hou	2012	70
13	Heterogeneity of Flt3-Expressing Multipotent Progenitors in Mouse Bone Marrow The Journal of Immunology ·Anne Y. Lai, Simon Lin, Motonari Kondo	2005	66
14	Expression of Cyclophilin B is Associated with Malignant Progression and Regulation of Genes Implicated in the Pathogenesis of Breast Cancer American Journal Of Pathology ·Feng Fang, Ayanna J. Flegler, Pan Du, Simon Lin, Charles V. Clevenger	2008	65
15	Impaired cell adhesion and apoptosis in a novel CLN9 Batten disease variant Annals of Neurology ·Angela Schulz, Sumeer Dhar, Svetlana N. Rylova, Ghassan Dbaibo, Joseph Alroy, Christian Hagel, Isabelo Artacho, Alfried Kohlschütter, Simon Lin, Rose‐Mary Boustany	2004	62
16	Exploring the FDA Adverse Event Reporting System to Generate Hypotheses for Monitoring of Disease Characteristics Clinical Pharmacology & Therapeutics ·Hong Fang, Ziying Su, Yun Wang, Anthony B. Miller, Zhen Liu, Paul C. Howard, Weida Tong, Simon Lin	2014	54
17	Gene expression profiles of the rat brain both immediately and 3 months following acute sarin exposure Biochemical Pharmacology ·Tirupapuliyur V. Damodaran, Anand G. Patel, Stephen Greenfield, Holly K. Dressman, Simon Lin, Mohamed B. Abou‐Donia	2005	54
18	Susceptibility to glaucoma: differential comparison of the astrocyte transcriptome from glaucomatous African American and Caucasian American donors Genome biology ·Thomas J. Lukas, Haixi Miao, Lin Chen, Sean M. Riordan, Wenjun Li, A. M. Crabb, Alexandria Wise, Pan Du, Simon Lin, M. Rosario Hernandez	2008	52
19	Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro Environmental Toxicology and Pharmacology ·Xiao Zhang, Andrew D. Wallace, Pan Du, Simon Lin, Andrea Baccarelli, Hongmei Jiang, Nadereh Jafari, Yinan Zheng, Hehuang Xie, Marcelo B. Soares, Warren A. Kibbe, Lifang Hou	2012	50
20	Selective glucocorticoid receptor translational isoforms reveal glucocorticoid-induced apoptotic transcriptomes Cell Death and Disease ·Indira Wu, Soon Cheon Shin, Yunying Cao, Ingrid Bender, Nadereh Jafari, Gang Feng, Simon Lin, John A. Cidlowski, Robert P. Schleimer, Nick Z. Lu	2013	49

About Simon Lin

Simon Lin is a scholar working on Molecular Biology, Oncology, Genetics, Immunology and Cancer Research, having authored 77 papers that have together received 5.7k indexed citations. Recurring topics across this work include Gene expression and cancer classification (12 papers), Bioinformatics and Genomic Networks (8 papers), Epigenetics and DNA Methylation (5 papers), Machine Learning in Bioinformatics (4 papers), RNA and protein synthesis mechanisms (4 papers), Fractal and DNA sequence analysis (3 papers), Hematopoietic Stem Cell Transplantation (3 papers) and Metabolomics and Mass Spectrometry Studies (3 papers). The work is most often cited by research in Molecular Biology (3.0k citations), Cancer Research (506 citations), Immunology (552 citations), Genetics (263 citations) and Developmental Neuroscience (101 citations). Simon Lin has collaborated with scholars based in United States, Austria and Belgium. Frequent co-authors include Pan Du, Warren A. Kibbe, Michael R. Green, Nathan D. Lawson, David Lapointe, Claude Gazin, Hervé Pagès, Lihua Julie Zhu, Wolfgang Huber and Robert J. Wechsler‐Reya. Their work appears in journals such as PLoS ONE, Bioinformatics, American Journal Of Pathology, Molecular Cancer and Journal of Thoracic and Cardiovascular Surgery.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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Simon Lin's Hit Papers

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