Shaofeng Lin

6.4k citations

27 papers · 1.3k · h-index 15

Impact in

Molecular Biology top 10%
- Machine Learning in Bioinformatics
- Ubiquitin and proteasome pathways
- RNA modifications and cancer
- RNA Research and Splicing
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Glycosylation and Glycoproteins Research
Aging

Papers in

Molecular Biology 21
- Ubiquitin and proteasome pathways 7
- Glycosylation and Glycoproteins Research 4
- Protein Degradation and Inhibitors 4
- RNA and protein synthesis mechanisms 4
- Genomics and Phylogenetic Studies 4
- RNA modifications and cancer 4
Spectroscopy 4
- Advanced Proteomics Techniques and Applications 4

Co-authors: Yu Xue (19 shared papers)Wankun Deng (9 shared papers)Ying Zhang (7 shared papers)Haodong Xu (8 shared papers)Jiaqi Zhou (7 shared papers)Di Peng (10 shared papers)Chenwei Wang (11 shared papers)Yaping Guo (5 shared papers)
Journals: Nucleic Acids Research (6 papers)Briefings in Bioinformatics (4 papers)Nature Communications (2 papers)Genomics Proteomics & Bioinformatics (2 papers)Cells (2 papers)
Partner nations: China United States India

In The Last Decade

Shaofeng Lin

26 papers receiving 1.3k citations

Peers

Countries citing papers authored by Shaofeng Lin

Since Specialization

Citations

This map shows the geographic impact of Shaofeng Lin's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shaofeng Lin with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shaofeng Lin more than expected).

Fields of papers citing papers by Shaofeng Lin

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shaofeng Lin. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shaofeng Lin. The network helps show where Shaofeng Lin may publish in the future.

Co-authors

The 25 scholars most cited alongside Shaofeng Lin, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Shaofeng Lin Line = papers co-authored together Shaofeng Lin links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 27 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	GPS 5.0: An Update on the Prediction of Kinase-Specific Phosphorylation Sites in Proteins Genomics Proteomics & Bioinformatics ·Chenwei Wang, Haodong Xu, Shaofeng Lin, Wankun Deng, Jiaqi Zhou, Ying Zhang, Ying Shi, Di Peng, Yu Xue	2020	219
2	PLMD: An updated data resource of protein lysine modifications Journal of genetics and genomics ·Haodong Xu, Jiaqi Zhou, Shaofeng Lin, Wankun Deng, Ying Zhang, Yu Xue	2017	183
3	PTMD: A Database of Human Disease-Associated Post-Translational Modifications Genomics Proteomics & Bioinformatics ·Haodong Xu, Yongbo Wang, Shaofeng Lin, Wankun Deng, Di Peng, Qinghua Cui, Yu Xue	2018	146
4	DrLLPS: a data resource of liquid–liquid phase separation in eukaryotes Nucleic Acids Research ·Wanshan Ning, Yaping Guo, Shaofeng Lin, Bin Mei, Yu Wu, Peiran Jiang, Xiaodan Tan, Weizhi Zhang, Guowei Chen, Di Peng, Liang Chu, Yu Xue	2019	133
5	iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations Nucleic Acids Research ·Jiaqi Zhou, Yang Xu, Shaofeng Lin, Yaping Guo, Wankun Deng, Ying Zhang, An‐Yuan Guo, Yu Xue	2017	84
6	Posttranscriptional regulation of de novo lipogenesis by glucose-induced O-GlcNAcylation Molecular Cell ·Wei Tan, Pei Jiang, Wanjun Zhang, Zhaohua Hu, Shaofeng Lin, Lulu Chen, Yingge Li, Changmin Peng, Zhuqing Li, Aihua Sun, Yali Chen, Wenge Zhu, Yu Xue, Yi Yao, Xiangpan Li, Qibin Song, Fuchu He, Weijie Qin, Huadong Pei	2021	68
7	OUP accepted manuscript Nucleic Acids Research ·Yang Xu, Shuang Zhang, Shaofeng Lin, Yaping Guo, Wankun Deng, Ying Zhang, Yu Xue	2016	64
8	dbPAF: an integrative database of protein phosphorylation in animals and fungi Scientific Reports ·Shahid Ullah, Shaofeng Lin, Yang Xu, Wankun Deng, Lili Ma, Ying Zhang, Zexian Liu, Yu Xue	2016	64
9	EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes Briefings in Bioinformatics ·Shaofeng Lin, Chenwei Wang, Jiaqi Zhou, Ying Shi, Chen Ruan, Yiran Tu, Lan Yao, Di Peng, Yu Xue	2019	61
10	CPLM 4.0: an updated database with rich annotations for protein lysine modifications Nucleic Acids Research ·Weizhi Zhang, Xiaodan Tan, Shaofeng Lin, Yujie Gou, (unknown), Chi Zhang, Wanshan Ning, Chenwei Wang, Yu Xue	2021	53
11	GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites Briefings in Bioinformatics ·Chenwei Wang, Xiaodan Tan, Dachao Tang, Yujie Gou, (unknown), Wanshan Ning, Shaofeng Lin, Weizhi Zhang, Miaomiao Chen, Di Peng, Yu Xue	2021	43
12	iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains Nucleic Acids Research ·Yaping Guo, Di Peng, Jiaqi Zhou, Shaofeng Lin, Chenwei Wang, Wanshan Ning, Haodong Xu, Wankun Deng, Yu Xue	2018	32
13	Integrated omics in Drosophila uncover a circadian kinome Nature Communications ·Chenwei Wang, Ke Shui, MA Shan-shan, Shaofeng Lin, Ying Zhang, Bo Wen, Wankun Deng, Haodong Xu, Hui Hu, An‐Yuan Guo, Yu Xue, Luoying Zhang	2020	25
14	dbPSP 2.0, an updated database of protein phosphorylation sites in prokaryotes Scientific Data ·Ying Shi, Ying Zhang, Shaofeng Lin, Chenwei Wang, Jiaqi Zhou, Di Peng, Yu Xue	2020	25
15	GPS-PBS: A Deep Learning Framework to Predict Phosphorylation Sites that Specifically Interact with Phosphoprotein-Binding Domains Cells ·Yaping Guo, Wanshan Ning, Peiran Jiang, Shaofeng Lin, Chenwei Wang, Xiaodan Tan, Lan Yao, Di Peng, Yu Xue	2020	14
16	PIM1 promotes hepatic conversion by suppressing reprogramming-induced ferroptosis and cell cycle arrest Nature Communications ·Yangyang Yuan, Chenwei Wang, Xuran Zhuang, Shaofeng Lin, Miaomiao Luo, Wankun Deng, Jiaqi Zhou, Lihui Liu, Lina Mao, Wenbo Peng, Jian Chen, Qiangsong Wang, Yilai Shu, Yu Xue, Pengyu Huang	2022	11
17	PTMsnp: A Web Server for the Identification of Driver Mutations That Affect Protein Post-translational Modification Frontiers in Cell and Developmental Biology ·Di Peng, Huiqin Li, Bosu Hu, Hongwan Zhang, Li Chen, Shaofeng Lin, Zhixiang Zuo, Yu Xue, Jian Ren, Yubin Xie	2020	10
18	Atg9-centered multi-omics integration reveals new autophagy regulators inSaccharomyces cerevisiae Autophagy ·Di Peng, Chen Ruan, Shanshan Fu, Chengwen He, Jing-Zhen Song, Hui Li, Yiran Tu, Dachao Tang, Lan Yao, Shaofeng Lin, Ying Shi, Weizhi Zhang, Hao Zhou, Le Zhu, Cong Ma, Cheng Chang, Jie Ma, Zhiping Xie, Chenwei Wang, Yu Xue	2021	7
19	MetaDegron: multimodal feature-integrated protein language model for predicting E3 ligase targeted degrons Briefings in Bioinformatics ·Mengqiu Zheng, Shaofeng Lin, Kunqi Chen, Ruifeng Hu, Liming Wang, Zhongming Zhao, Haodong Xu	2024	5
20	A new method for nondestructively measuring pressure based on the Rayleigh wave Shaofeng Lin, Hongjian Zhang	2004	5

About Shaofeng Lin

Shaofeng Lin is a scholar working on Molecular Biology, Spectroscopy, Oncology, Epidemiology and Immunology, having authored 27 papers that have together received 1.3k indexed citations. Recurring topics across this work include Ubiquitin and proteasome pathways (7 papers), Advanced Proteomics Techniques and Applications (4 papers), Glycosylation and Glycoproteins Research (4 papers), Protein Degradation and Inhibitors (4 papers), RNA and protein synthesis mechanisms (4 papers), Genomics and Phylogenetic Studies (4 papers), RNA modifications and cancer (4 papers) and Peptidase Inhibition and Analysis (3 papers). The work is most often cited by research in Molecular Biology (977 citations), Aging (18 citations), Spectroscopy (114 citations), Cancer Research (80 citations) and Geriatrics and Gerontology (17 citations). Shaofeng Lin has collaborated with scholars based in China, United States and India. Frequent co-authors include Yu Xue, Wankun Deng, Ying Zhang, Haodong Xu, Jiaqi Zhou, Di Peng, Chenwei Wang, Yaping Guo, Ying Shi and Yang Xu. Their work appears in journals such as Nucleic Acids Research, Briefings in Bioinformatics, Nature Communications, Genomics Proteomics & Bioinformatics and Cells.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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