John P. Hamilton

12.5k citations

87 papers · 5.9k · 2 hit papers · h-index 40

Impact in

Plant Science top 0.2%
- Plant Pathogens and Resistance
- Plant Disease Resistance and Genetics
- Plant-Microbe Interactions and Immunity
- Chromosomal and Genetic Variations
- Plant Molecular Biology Research
Horticulture top 2%

Papers in

Plant Science 52
- Plant Pathogens and Resistance 21
- Plant Disease Resistance and Genetics 20
- Chromosomal and Genetic Variations 15
- Plant-Microbe Interactions and Immunity 11
- Plant Pathogenic Bacteria Studies 9
- Plant Virus Research Studies 9
Molecular Biology 38
- Genomics and Phylogenetic Studies 19
- Plant biochemistry and biosynthesis 10

Co-authors: C. Robin Buell (79 shared papers)Brieanne Vaillancourt (37 shared papers)Brian J. Haas (4 shared papers)Kevin L. Childs (11 shared papers)Matthew A. Campbell (4 shared papers)Haining Lin (3 shared papers)Joshua C. Wood (25 shared papers)Jennifer R. Wortman (2 shared papers)
Journals: The Plant Genome (10 papers)PLoS ONE (9 papers)G3 Genes Genomes Genetics (8 papers)The Plant Journal (7 papers)BMC Genomics (5 papers)
Partner nations: United States United Kingdom Canada

In The Last Decade

John P. Hamilton

81 papers receiving 5.8k citations

John P. Hamilton's Hit Papers

align trajectories log scale

Single-cell multi-omics in the medicinal plant Catharanthus roseus 2023 · 124 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2023 Nature Chemical Biology
2006 Nucleic Acids Research

Peers

Countries citing papers authored by John P. Hamilton

Since Specialization

Citations

This map shows the geographic impact of John P. Hamilton's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John P. Hamilton with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John P. Hamilton more than expected).

Fields of papers citing papers by John P. Hamilton

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John P. Hamilton. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John P. Hamilton. The network helps show where John P. Hamilton may publish in the future.

Co-authors

The 25 scholars most cited alongside John P. Hamilton, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with John P. Hamilton Line = papers co-authored together John P. Hamilton links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 87 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	The TIGR Rice Genome Annotation Resource: improvements and new features Nucleic Acids Research ·Shuai Ouyang, W. Zhu, John P. Hamilton, Haining Lin, Matthew A. Campbell, Kevin L. Childs, Françoise Thibaud‐Nissen, Renae L. Malek, Y. Lee, Li Zheng, Joshua Orvis, Brian J. Haas, Jennifer R. Wortman, C. Robin Buell Hit paper breakdown →	2006	977
2	Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis BMC Genomics ·Matthew A. Campbell, Brian J. Haas, John P. Hamilton, Stephen M. Mount, C. Robin Buell	2006	361
3	Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato Proceedings of the National Academy of Sciences ·Michael A. Hardigan, F. Parker E. Laimbeer, Linsey Newton, Emily Crisovan, John P. Hamilton, Brieanne Vaillancourt, Krystle Wiegert‐Rininger, Joshua C. Wood, David S. Douches, Eva M. Farré, Richard E. Veilleux, C. Robin Buell	2017	243
4	Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato PLoS ONE ·Sung‐Chur Sim, Gregor Durstewitz, Jörg Plieske, Ralf Wieseke, Martin W. Ganal, Allen Van Deynze, John P. Hamilton, C. Robin Buell, Mathilde Causse, Saranga Wijeratne, David M. Francis	2012	237
5	Construction of a chromosome-scale long-read reference genome assembly for potato GigaScience ·Gina M. Pham, John P. Hamilton, Joshua C. Wood, (unknown), Hainan Zhao, Brieanne Vaillancourt, Shujun Ou, Jiming Jiang, C. Robin Buell	2020	208
6	Single nucleotide polymorphism discovery in elite north american potato germplasm BMC Genomics ·John P. Hamilton, Candice N. Hansey, Brett R. Whitty, Kevin Stoffel, Alicia N. Massa, Allen Van Deynze, Walter S. De Jong, David S. Douches, C. Robin Buell	2011	177
7	Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence PLoS ONE ·Kimberly J. Felcher, Joseph Coombs, Alicia N. Massa, Candice N. Hansey, John P. Hamilton, Richard E. Veilleux, C. Robin Buell, David S. Douches	2012	175
8	Haplotype-resolved genome analyses of a heterozygous diploid potato Nature Genetics ·Qian Zhou, Dié Tang, Wu Huang, Zhongmin Yang, Yu Zhang, John P. Hamilton, Richard G. F. Visser, C. Bachem, C. Robin Buell, Zhonghua Zhang, Chunzhi Zhang, Sanwen Huang	2020	171
9	The Institute for Genomic Research Osa1 Rice Genome Annotation Database PLANT PHYSIOLOGY ·Qiaoping Yuan, Shu Ouyang, Aihui Wang, Wei Zhu, Rama Maiti, Haining Lin, John P. Hamilton, Brian J. Haas, Răzvan Sultana, Foo Cheung, Jennifer R. Wortman, C. Robin Buell	2005	162
10	Genome‐guided investigation of plant natural product biosynthesis The Plant Journal ·Franziska Kellner, Jeongwoon Kim, Bernardo Clavijo, John P. Hamilton, Kevin L. Childs, Brieanne Vaillancourt, Jason Cepela, Marc Habermann, Burkhard Steuernagel, Leah Clissold, Kirsten McLay, C. Robin Buell, Sarah E. O’Connor	2015	161
11	The TIGR Plant Transcript Assemblies database Nucleic Acids Research ·Kevin L. Childs, John P. Hamilton, W. Zhu, Elodie Ly, Foo Cheung, Hongsheng Wu, Pablo D. Rabinowicz, Chris Town, C. Robin Buell, Agnes P. Chan	2006	142
12	Advances in plant genome sequencing The Plant Journal ·John P. Hamilton, C. Robin Buell	2012	136
13	Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum The Plant Cell ·Michael A. Hardigan, Emily Crisovan, John P. Hamilton, Jeongwoon Kim, Parker Laimbeer, Courtney P. Leisner, Norma C. Manrique‐Carpintero, Linsey Newton, Gina M. Pham, Brieanne Vaillancourt, Yang Xue-ming, Zixian Zeng, David S. Douches, Jiming Jiang, Richard E. Veilleux, C. Robin Buell	2016	129
14	Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes PLoS ONE ·Bishwo N. Adhikari, John P. Hamilton, Marcelo M. Zerillo, Ned Tisserat, C. André Lévesque, C. Robin Buell	2013	126
15	Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species PLoS ONE ·Elsa Góngora‐Castillo, Kevin L. Childs, Greg Fedewa, John P. Hamilton, David K. Liscombe, Maria Magallanes‐Lundback, Kranthi K. Mandadi, Ezekiel Nims, Weerawat Runguphan, Brieanne Vaillancourt, Marina Varbanova‐Herde, Dean DellaPenna, Thomas D. McKnight, Sarah E. O’Connor, C. Robin Buell	2012	126
16	Single-cell multi-omics in the medicinal plant Catharanthus roseus Nature Chemical Biology ·Chenxin Li, Joshua C. Wood, Anh Hai Vu, John P. Hamilton, Carlos E. Rodríguez López, Richard Payne, Delia Ayled Serna Guerrero, Klaus Gase, Kotaro T. Yamamoto, Brieanne Vaillancourt, Lorenzo Caputi, Sarah E. O’Connor, C. Robin Buell Hit paper breakdown →	2023	124
17	Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia Planta ·Andrew T. Wiersma, Todd A. Gaines, Christopher Preston, John P. Hamilton, Darci A. Giacomini, C. Robin Buell, Jan E. Leach, Philip Westra	2014	110
18	Genomics-Based Diagnostic Marker Development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola Plant Disease ·Jillian M. Lang, John P. Hamilton, Maria Genaleen Q. Diaz, Marie‐Anne Van Sluys, Ma. Ruby G. Burgos, Casiana M. Vera Cruz, C. Robin Buell, Ned Tisserat, Jan E. Leach	2010	109
19	An updated gene atlas for maize reveals organ‐specific and stress‐induced genes The Plant Journal ·Genevieve M. Hoopes, John P. Hamilton, Joshua C. Wood, Eddi Esteban, Asher Pasha, Brieanne Vaillancourt, Nicholas J. Provart, C. Robin Buell	2018	107
20	A Stereoselective Hydroxylation Step of Alkaloid Biosynthesis by a Unique Cytochrome P450 in Catharanthus roseus Journal of Biological Chemistry ·LesleyAnn Giddings, David K. Liscombe, John P. Hamilton, Kevin L. Childs, Dean DellaPenna, C. Robin Buell, Sarah E. O’Connor	2011	104

About John P. Hamilton

John P. Hamilton is a scholar working on Plant Science, Molecular Biology, Genetics, Food Science and Pharmacology, having authored 87 papers that have together received 5.9k indexed citations. Recurring topics across this work include Plant Pathogens and Resistance (21 papers), Plant Disease Resistance and Genetics (20 papers), Genomics and Phylogenetic Studies (19 papers), Chromosomal and Genetic Variations (15 papers), Plant-Microbe Interactions and Immunity (11 papers), Plant biochemistry and biosynthesis (10 papers), Plant Pathogenic Bacteria Studies (9 papers) and Plant Virus Research Studies (9 papers). The work is most often cited by research in Plant Science (3.9k citations), Horticulture (47 citations), Molecular Biology (2.8k citations), Food Science (505 citations) and Genetics (747 citations). John P. Hamilton has collaborated with scholars based in United States, United Kingdom and Canada. Frequent co-authors include C. Robin Buell, Brieanne Vaillancourt, Brian J. Haas, Kevin L. Childs, Matthew A. Campbell, Haining Lin, Joshua C. Wood, Jennifer R. Wortman, David S. Douches and Françoise Thibaud‐Nissen. Their work appears in journals such as The Plant Genome, PLoS ONE, G3 Genes Genomes Genetics, The Plant Journal and BMC Genomics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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John P. Hamilton

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All Works

About John P. Hamilton

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