I-Min A. Chen

9.4k citations

36 papers · 4.5k · 5 hit papers · h-index 24

Impact in

Ecology top 0.5%
- Microbial Community Ecology and Physiology
- Bacteriophages and microbial interactions
Molecular Biology top 2%
- Genomics and Phylogenetic Studies
- Gut microbiota and health
- Microbial Metabolic Engineering and Bioproduction

Papers in

Molecular Biology 27
- Genomics and Phylogenetic Studies 26
- Gut microbiota and health 3
Ecology 24
- Microbial Community Ecology and Physiology 16
- Bacteriophages and microbial interactions 10
- Environmental DNA in Biodiversity Studies 3

Co-authors: Nikos C. Kyrpides (31 shared papers)Natalia Ivanova (24 shared papers)Ken Chu (17 shared papers)Victor Markowitz (14 shared papers)Krishna Palaniappan (19 shared papers)Konstantinos Mavromatis (9 shared papers)Anna Ratner (13 shared papers)Marcel Huntemann (16 shared papers)
Journals: Nucleic Acids Research (18 papers)PLoS ONE (2 papers)Bioinformatics (1 paper)Trends in Microbiology (1 paper)Microbiome (1 paper)
Partner nations: United States Greece Spain

In The Last Decade

I-Min A. Chen

35 papers receiving 4.5k citations

I-Min A. Chen's Hit Papers

5 papers align trajectories log scale

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata 2022 · 234 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2022 Nucleic Acids Research
2020 Nucleic Acids Research
2018 Nucleic Acids Research
2013 Nucleic Acids Research
2009 Bioinformatics

Peers

Countries citing papers authored by I-Min A. Chen

Since Specialization

Citations

This map shows the geographic impact of I-Min A. Chen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by I-Min A. Chen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites I-Min A. Chen more than expected).

Fields of papers citing papers by I-Min A. Chen

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by I-Min A. Chen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by I-Min A. Chen. The network helps show where I-Min A. Chen may publish in the future.

Co-authors

The 25 scholars most cited alongside I-Min A. Chen, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with I-Min A. Chen Line = papers co-authored together I-Min A. Chen links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 36 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes Nucleic Acids Research ·I-Min A. Chen, Ken Chu, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Marcel Huntemann, Neha Varghese, James R. White, R. Seshadri, Tatyana I. Smirnova, Edward Kirton, Sean P. Jungbluth, Tanja Woyke, Emiley A. Eloe‐Fadrosh, Natalia Ivanova, Nikos C. Kyrpides Hit paper breakdown →	2018	594
2	IMG ER: a system for microbial genome annotation expert review and curation Bioinformatics ·Victor Markowitz, Konstantinos Mavromatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos C. Kyrpides Hit paper breakdown →	2009	550
3	IMG 4 version of the integrated microbial genomes comparative analysis system Nucleic Acids Research ·Victor Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavromatis, Amrita Pati, Natalia Ivanova, Nikos C. Kyrpides Hit paper breakdown →	2013	431
4	IMG/M: integrated genome and metagenome comparative data analysis system Nucleic Acids Research ·I-Min A. Chen, Victor Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos C. Kyrpides	2016	333
5	The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities Nucleic Acids Research ·I-Min A. Chen, Ken Chu, Krishna Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Neha Varghese, R. Seshadri, Simon Roux, Tanja Woyke, Emiley A. Eloe‐Fadrosh, Natalia Ivanova, Nikos C. Kyrpides Hit paper breakdown →	2020	299
6	The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) Standards in Genomic Sciences ·Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides	2015	265
7	IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata Nucleic Acids Research ·Antônio Pedro Camargo, Stephen Nayfach, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Stephan Ritter, T. B. K. Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia Ivanova, Emiley A. Eloe‐Fadrosh, Nikos C. Kyrpides, Simon Roux Hit paper breakdown →	2022	234
8	IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses Nucleic Acids Research ·Simon Roux, David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, T. B. K. Reddy, Stephen Nayfach, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia Ivanova, Emiley A. Eloe‐Fadrosh, Nikos C. Kyrpides	2020	227
9	IMG/M 4 version of the integrated metagenome comparative analysis system Nucleic Acids Research ·Victor Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah G. Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavromatis, Amrita Pati, Natalia Ivanova, Nikos C. Kyrpides	2013	213
10	The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata Nucleic Acids Research ·Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavromatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor Markowitz, Nikos C. Kyrpides	2009	206
11	The integrated microbial genomes system: an expanding comparative analysis resource Nucleic Acids Research ·Victor Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia Ivanova, Nikos C. Kyrpides	2009	206
12	Genomes OnLine Database (GOLD) v.8: overview and updates Nucleic Acids Research ·Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Jagadish Chandrabose Sundaramurthi, Janey Lee, Mahathi Kandimalla, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy	2020	124
13	Genomes OnLine database (GOLD) v.7: updates and new features Nucleic Acids Research ·Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Hema Y Katta, Alejandro Mojica, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy	2018	120
14	IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes Nucleic Acids Research ·David Páez-Espino, Simon Roux, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Marcel Huntemann, T. B. K. Reddy, Joan Carles Pons, Mercè Llabrés, Emiley A. Eloe‐Fadrosh, Natalia Ivanova, Nikos C. Kyrpides	2018	109
15	The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4) Standards in Genomic Sciences ·Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Kristin Tennessen, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides	2016	97
16	IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase Nucleic Acids Research ·Krishna Palaniappan, I-Min A. Chen, Ken Chu, Anna Ratner, R. Seshadri, Nikos C. Kyrpides, Natalia Ivanova, Nigel J. Mouncey	2019	79
17	DOE JGI Metagenome Workflow mSystems ·Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick Hajek, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Yuko Yoshinaga, Ronan C. O’Malley, R. Seshadri, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh, I-Min A. Chen, Alex Copeland, Natalia Ivanova	2021	72
18	IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes Nucleic Acids Research ·Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor Markowitz, Nikos C. Kyrpides, Natalia Ivanova	2016	57
19	Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9 Nucleic Acids Research ·Supratim Mukherjee, Dimitri Stamatis, Cindy Tianqing Li, Galina Ovchinnikova, Jon Bertsch, Jagadish Chandrabose Sundaramurthi, Mahathi Kandimalla, Paul A. Nicolopoulos, Alessandro Favognano, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy	2022	57
20	Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community Microbiome ·Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Alyce M. Hancock, Sarah Brazendale, James Bevington, Simon Roux, David Páez-Espino, Stephen Nayfach, Maureen Berg, Frederik Schulz, I-Min A. Chen, Marcel Huntemann, Nicole Shapiro, Nikos C. Kyrpides, Tanja Woyke, Emiley A. Eloe‐Fadrosh, Ricardo Cavicchioli	2020	49

About I-Min A. Chen

I-Min A. Chen is a scholar working on Molecular Biology, Ecology, Plant Science, Endocrinology and Pharmacology, having authored 36 papers that have together received 4.5k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (26 papers), Microbial Community Ecology and Physiology (16 papers), Bacteriophages and microbial interactions (10 papers), Gut microbiota and health (3 papers), Plant Virus Research Studies (3 papers), Environmental DNA in Biodiversity Studies (3 papers), Plant and Fungal Interactions Research (2 papers) and Plant Disease Resistance and Genetics (2 papers). The work is most often cited by research in Ecology (2.2k citations), Molecular Biology (2.9k citations), Endocrinology (175 citations), Environmental Chemistry (317 citations) and Biotechnology (240 citations). I-Min A. Chen has collaborated with scholars based in United States, Greece and Spain. Frequent co-authors include Nikos C. Kyrpides, Natalia Ivanova, Ken Chu, Victor Markowitz, Krishna Palaniappan, Konstantinos Mavromatis, Anna Ratner, Marcel Huntemann, Manoj Pillay and Jinghua Huang. Their work appears in journals such as Nucleic Acids Research, PLoS ONE, Bioinformatics, Trends in Microbiology and Microbiome.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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I-Min A. Chen

I-Min A. Chen's Hit Papers

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Fields of papers citing papers by I-Min A. Chen

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About I-Min A. Chen

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