Geo Pertea
Impact in
- Cancer Research top 0.05%
- Cancer-related molecular mechanisms research
- Molecular Biology top 0.05%
- RNA modifications and cancer
- RNA Research and Splicing
- Genomics and Phylogenetic Studies
- Plant Gene Expression Analysis
- RNA and protein synthesis mechanisms
Papers in
-
- Genomics and Phylogenetic Studies 13
- RNA modifications and cancer 8
- RNA and protein synthesis mechanisms 6
- Gene expression and cancer classification 3
- Molecular Biology Techniques and Applications 3
- Epigenetics and DNA Methylation 2
- Co-authors
- Steven L. Salzberg (12 shared papers)Cole Trapnell (3 shared papers)Daehwan Kim (3 shared papers)Mihaela Pertea (7 shared papers)Harold Pimentel (2 shared papers)Lior Pachter (2 shared papers)Ryan Kelley (1 shared paper)Joshua T. Mendell (1 shared paper)
- Journals
- Genome biology (5 papers)Nature Communications (2 papers)Nature Biotechnology (2 papers)Genome Research (2 papers)Bioinformatics (2 papers)
- Partner nations
- United StatesUnited KingdomIndia
In The Last Decade
Geo Pertea
28 papers receiving 48.7k citations
Geo Pertea's Hit Papers
Peers
Comparison fields: 5 of 184
- Cancer Research 6.7k
- Molecular Biology 26.6k
- Plant Science 13.0k
- Aging 452
- Genetics 6.2k
Countries citing papers authored by Geo Pertea
This map shows the geographic impact of Geo Pertea's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Geo Pertea with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Geo Pertea more than expected).
Fields of papers citing papers by Geo Pertea
This network shows the impact of papers produced by Geo Pertea. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Geo Pertea. The network helps show where Geo Pertea may publish in the future.
Co-authors
The 25 scholars most cited alongside Geo Pertea, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.
All Works
Showing the 20 most-cited of 28 papers — load more, or switch the sort, to bring in the rest.
| # | Work | ||
|---|---|---|---|
| 1 | Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Hit paper breakdown → | 2010 | 11827 |
| 2 | TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions Hit paper breakdown → | 2013 | 9501 |
| 3 | Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Hit paper breakdown → | 2012 | 9235 |
| 4 | StringTie enables improved reconstruction of a transcriptome from RNA-seq reads Hit paper breakdown → | 2015 | 8943 |
| 5 | Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown Hit paper breakdown → | 2016 | 4595 |
| 6 | TIGR Gene Indices clustering tools (TGICL): a softwaresystem for fast clustering of large EST datasets Hit paper breakdown → | 2003 | 1584 |
| 7 | Transcriptome assembly from long-read RNA-seq alignments with StringTie2 Hit paper breakdown → | 2019 | 1143 |
| 8 | A whole-genome assembly of the domestic cow, Bos taurus Hit paper breakdown → | 2009 | 890 |
| 9 | Improved transcriptome assembly using a hybrid of long and short reads with StringTie Hit paper breakdown → | 2022 | 249 |
| 10 | 2000 | 192 | |
| 11 | 2018 | 175 | |
| 12 | 2002 | 114 | |
| 13 | 2001 | 101 | |
| 14 | 2001 | 93 | |
| 15 | 2009 | 90 | |
| 16 | 2018 | 59 | |
| 17 | 2002 | 59 | |
| 18 | 2007 | 56 | |
| 19 | 2020 | 41 | |
| 20 | 2015 | 19 |
About Geo Pertea
Geo Pertea is a scholar working on Molecular Biology, Plant Science, Genetics, Cancer Research and Biological Psychiatry, having authored 28 papers that have together received 49.0k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (13 papers), RNA modifications and cancer (8 papers), RNA and protein synthesis mechanisms (6 papers), Gene expression and cancer classification (3 papers), Molecular Biology Techniques and Applications (3 papers), Cancer-related molecular mechanisms research (3 papers), Epigenetics and DNA Methylation (2 papers) and Antibiotic Resistance in Bacteria (2 papers). The work is most often cited by research in Cancer Research (6.7k citations), Molecular Biology (26.6k citations), Plant Science (13.0k citations), Aging (452 citations) and Genetics (6.2k citations). Geo Pertea has collaborated with scholars based in United States, United Kingdom and India. Frequent co-authors include Steven L. Salzberg, Cole Trapnell, Daehwan Kim, Mihaela Pertea, Harold Pimentel, Lior Pachter, Ryan Kelley, Joshua T. Mendell, Tsung-Cheng Chang and Corina Antonescu. Their work appears in journals such as Genome biology, Nature Communications, Nature Biotechnology, Genome Research and Bioinformatics.
Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.