Marieke Simonis

3.4k citations

24 papers · 2.4k · 1 hit paper · h-index 16

Impact in

Molecular Biology top 5%
- Genomics and Chromatin Dynamics
- RNA Research and Splicing
- RNA and protein synthesis mechanisms
- RNA modifications and cancer
- Epigenetics and DNA Methylation
- CRISPR and Genetic Engineering
Cancer Research top 5%
- Cancer-related molecular mechanisms research

Papers in

Molecular Biology 16
- Genomics and Chromatin Dynamics 10
- RNA Research and Splicing 4
- RNA and protein synthesis mechanisms 4
- CRISPR and Genetic Engineering 3
- Gene expression and cancer classification 2
- Viral Infectious Diseases and Gene Expression in Insects 2
Genetics 7

Co-authors: Wouter de Laat (9 shared papers)Petra Klous (6 shared papers)Erik Splinter (6 shared papers)Bas van Steensel (2 shared papers)Elzo de Wit (2 shared papers)Yuri M. Moshkin (1 shared paper)Rob Willemsen (1 shared paper)Jurgen Kooren (2 shared papers)
Journals: PLoS ONE (3 papers)Nature Methods (2 papers)Genome biology (2 papers)Nucleic Acids Research (2 papers)Biotechnology Journal (1 paper)
Partner nations: Netherlands United States United Kingdom

In The Last Decade

Marieke Simonis

24 papers receiving 2.4k citations

Marieke Simonis's Hit Papers

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Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C) 2006 · 1.0k citations

Peers

Countries citing papers authored by Marieke Simonis

Since Specialization

Citations

This map shows the geographic impact of Marieke Simonis's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marieke Simonis with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marieke Simonis more than expected).

Fields of papers citing papers by Marieke Simonis

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marieke Simonis. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marieke Simonis. The network helps show where Marieke Simonis may publish in the future.

Co-authors

The 25 scholars most cited alongside Marieke Simonis, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Marieke Simonis Line = papers co-authored together Marieke Simonis links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

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#	Work
1	Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C) Nature Genetics ·Marieke Simonis, Petra Klous, Erik Splinter, Yuri M. Moshkin, Rob Willemsen, Elzo de Wit, Bas van Steensel, Wouter de Laat Hit paper breakdown →	2006	1026
2	Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes Genome biology ·Sebastiaan van Heesch, Maarten van Iterson, Jetse Jacobi, Sander Boymans, Paul Essers, Ewart de Bruijn, Wensi Hao, Alyson W. MacInnes, Edwin Cuppen, Marieke Simonis	2014	289
3	An evaluation of 3C-based methods to capture DNA interactions Nature Methods ·Marieke Simonis, Jurgen Kooren, Wouter de Laat	2007	229
4	Interactions among Polycomb Domains Are Guided by Chromosome Architecture PLoS Genetics ·Bas Tolhuis, Marleen Blom, Ron Kerkhoven, Ludo Pagie, Hans Teunissen, Marja Nieuwland, Marieke Simonis, Wouter de Laat, Maarten van Lohuizen, Bas van Steensel	2011	129
5	Variegated gene expression caused by cell-specific long-range DNA interactions Nature Cell Biology ·Daan Noordermeer, Elzo de Wit, Petra Klous, Harmen J.G. van de Werken, Marieke Simonis, Melissa Lopez-Jones, Bert Eussen, Annelies de Klein, Robert H. Singer, Wouter de Laat	2011	120
6	Nucleosomal DNA binding drives the recognition of H3K36-methylated nucleosomes by the PSIP1-PWWP domain Epigenetics & Chromatin ·Rick van Nuland, Frederik MA van Schaik, Marieke Simonis, Sebastiaan van Heesch, Edwin Cuppen, Rolf Boelens, HT Marc Timmers, Hugo van Ingen	2013	119
7	Maintenance of Long-Range DNA Interactions after Inhibition of Ongoing RNA Polymerase II Transcription PLoS ONE ·Robert‐Jan Palstra, Marieke Simonis, Petra Klous, Émilie Brasset, Bart A. Eijkelkamp, Wouter de Laat	2008	106
8	High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology Nature Methods ·Marieke Simonis, Petra Klous, Irene Homminga, Robert‐Jan H. Galjaard, Erikjan Rijkers, Frank Grosveld, Jules P.P. Meijerink, Wouter de Laat	2009	66
9	Genomic landscape of rat strain and substrain variation BMC Genomics ·Roel Hermsen, Joep de Ligt, Wim Spee, Francis Blokzijl, Sebastian Schäfer, Eleonora Adami, Sander Boymans, Stephen C. Flink, Ruben van Boxtel, Robin H. van der Weide, Timothy J. Aitman, Norbert Hübner, Marieke Simonis, Boris Tabakoff, Victor Guryev, Edwin Cuppen	2015	66
10	Chapter 5 Three‐Dimensional Organization of Gene Expression in Erythroid Cells Current topics in developmental biology ·Wouter de Laat, Petra Klous, Jurgen Kooren, Daan Noordermeer, Robert‐Jan Palstra, Marieke Simonis, Erik Splinter, Frank Grosveld	2008	61
11	Justice and the human alarm system: The impact of exclamation points and flashing lights on the justice judgment process Journal of Experimental Social Psychology ·Kees van den Bos, Jaap Ham, E. Allan Lind, Marieke Simonis, Wiljo J. van Essen, Mark Rijpkema	2007	43
12	Efficient mapping of transgene integration sites and local structural changes in Cre transgenic mice using targeted locus amplification Nucleic Acids Research ·Carol Cain-Hom, Erik Splinter, Max van Min, Marieke Simonis, Monique van de Heijning, M. Juanita Martinez, Vida Asghari, J. Colin Cox, Søren Warming	2016	39
13	FISH-eyed and genome-wide views on the spatial organisation of gene expression Biochimica et Biophysica Acta (BBA) - Molecular Cell Research ·Marieke Simonis, Wouter de Laat	2008	25
14	Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells Genome Medicine ·Sjors Middelkamp, Sebastiaan van Heesch, A. Koen Braat, Joep de Ligt, Maarten van Iterson, Marieke Simonis, Markus J. van Roosmalen, Martijn J. E. Kelder, Evelien Kruisselbrink, Ron Hochstenbach, Nienke E. Verbeek, Elly F. Ippel, Youri Adolfs, R. Jeroen Pasterkamp, Wigard P. Kloosterman, Ewart Kuijk, Edwin Cuppen	2017	25
15	Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells Nucleic Acids Research ·Sjoerd J.B. Holwerda, Harmen J.G. van de Werken, Claudia Ribeiro de Almeida, Ingrid M. Bergen, Marjolein J. W. de Bruijn, Marjon J.A.M. Verstegen, Marieke Simonis, Erik Splinter, Patrick J. Wijchers, Rudi W. Hendriks, Wouter de Laat	2013	24
16	Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel Genome biology ·Marieke Simonis, Santosh S. Atanur, Sam Linsen, Victor Guryev, Frans-Paul Ruzius, Laurence Gamé, Nico Lansu, Ewart de Bruijn, Sebastiaan van Heesch, Steven J.M. Jones, Michal Pravenec, Timothy J. Aitman, Edwin Cuppen	2012	22
17	Enhanced CHO Clone Screening: Application of Targeted Locus Amplification and Next‐Generation Sequencing Technologies for Cell Line Development Biotechnology Journal ·Samuel H. Aeschlimann, C. Graf, Dmytro Mayilo, Hélène Lindecker, Lorena Urda, Nora Kappes, Alicia Leone Burr, Marieke Simonis, Erik Splinter, Max van Min, Holger Laux	2019	13
18	Lack of Major Genome Instability in Tumors of p53 Null Rats PLoS ONE ·Roel Hermsen, Pim W. Toonen, Ewart Kuijk, Sameh A. Youssef, Raoul Kuiper, Sebastiaan van Heesch, Alain de Bruin, Edwin Cuppen, Marieke Simonis	2015	12
19	TEG001 Insert Integrity from Vector Producer Cells until Medicinal Product Molecular Therapy ·Trudy Straetemans, Anke Janssen, Koen Jansen, Ruud Doorn, Tineke Aarts, Anna D.D. van Muyden, Marieke Simonis, Judith G.M. Bergboer, Moniek de Witte, Zsolt Sebestyén, Jürgen Kuball	2019	8
20	Oncogenic pathways impinging on the G2-restriction point Oncogene ·Floris Foijer, Marieke Simonis, M. van Vliet, Lodewyk F.A. Wessels, Ron Kerkhoven, Peter K. Sorger, Hein te Riele	2007	7

About Marieke Simonis

Marieke Simonis is a scholar working on Molecular Biology, Genetics, Oncology, Plant Science and Public Health, Environmental and Occupational Health, having authored 24 papers that have together received 2.4k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (10 papers), RNA Research and Splicing (4 papers), RNA and protein synthesis mechanisms (4 papers), CAR-T cell therapy research (3 papers), CRISPR and Genetic Engineering (3 papers), Gene expression and cancer classification (2 papers), Cancer-related Molecular Pathways (2 papers) and Viral Infectious Diseases and Gene Expression in Insects (2 papers). The work is most often cited by research in Molecular Biology (2.1k citations), Cancer Research (323 citations), Genetics (401 citations), Plant Science (497 citations) and Virology (32 citations). Marieke Simonis has collaborated with scholars based in Netherlands, United States and United Kingdom. Frequent co-authors include Wouter de Laat, Petra Klous, Erik Splinter, Bas van Steensel, Elzo de Wit, Yuri M. Moshkin, Rob Willemsen, Jurgen Kooren, Edwin Cuppen and Sebastiaan van Heesch. Their work appears in journals such as PLoS ONE, Nature Methods, Genome biology, Nucleic Acids Research and Biotechnology Journal.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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