Shane McCarthy
Impact in
- Genetics top 0.5%
- Genetic diversity and population structure
- Genetic and phenotypic traits in livestock
- Genetic Mapping and Diversity in Plants and Animals
- Genetic Associations and Epidemiology
- Molecular Biology top 1%
- Genomics and Phylogenetic Studies
- CRISPR and Genetic Engineering
- RNA modifications and cancer
Papers in
- Genetics 15
- Genetic Associations and Epidemiology 4
- Genetic diversity and population structure 4
- Genomics and Rare Diseases 4
- Genetic and phenotypic traits in livestock 2
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- Genomics and Phylogenetic Studies 5
- Co-authors
- Petr Danecek (4 shared papers)James Bonfield (2 shared papers)Thomas Keane (4 shared papers)Martin Pollard (2 shared papers)Valeriu Ohan (1 shared paper)Andrew Whitwham (1 shared paper)Jennifer Liddle (1 shared paper)Robert M. Davies (1 shared paper)
- Journals
- Bioinformatics (4 papers)GigaScience (3 papers)Annals of Oncology (3 papers)Genome Research (2 papers)Genome biology (2 papers)
- Partner nations
- United KingdomUnited StatesSweden
In The Last Decade
Shane McCarthy
48 papers receiving 10.1k citations
Shane McCarthy's Hit Papers
Peers
Comparison fields: 5 of 181
- Genetics 2.8k
- Molecular Biology 4.4k
- Plant Science 1.9k
- Endocrinology 222
- Cancer Research 592
Countries citing papers authored by Shane McCarthy
This map shows the geographic impact of Shane McCarthy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shane McCarthy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shane McCarthy more than expected).
Fields of papers citing papers by Shane McCarthy
This network shows the impact of papers produced by Shane McCarthy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shane McCarthy. The network helps show where Shane McCarthy may publish in the future.
Co-authors
The 25 scholars most cited alongside Shane McCarthy, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.
All Works
Showing the 20 most-cited of 52 papers — load more, or switch the sort, to bring in the rest.
| # | Work | ||
|---|---|---|---|
| 1 | Twelve years of SAMtools and BCFtools Hit paper breakdown → | 2021 | 7075 |
| 2 | Reference-based phasing using the Haplotype Reference Consortium panel Hit paper breakdown → | 2016 | 870 |
| 3 | Identifying and removing haplotypic duplication in primary genome assemblies Hit paper breakdown → | 2020 | 683 |
| 4 | YaHS: yet another Hi-C scaffolding tool Hit paper breakdown → | 2022 | 312 |
| 5 | 2017 | 271 | |
| 6 | 2007 | 101 | |
| 7 | 2012 | 99 | |
| 8 | 2020 | 61 | |
| 9 | 2021 | 60 | |
| 10 | 2016 | 55 | |
| 11 | 2009 | 46 | |
| 12 | 2005 | 43 | |
| 13 | 2017 | 40 | |
| 14 | 2005 | 36 | |
| 15 | 2005 | 34 | |
| 16 | 2011 | 32 | |
| 17 | 2005 | 32 | |
| 18 | 2022 | 28 | |
| 19 | 2017 | 25 | |
| 20 | 2016 | 21 |
About Shane McCarthy
Shane McCarthy is a scholar working on Genetics, Molecular Biology, Pulmonary and Respiratory Medicine, Radiology, Nuclear Medicine and Imaging and Ecology, Evolution, Behavior and Systematics, having authored 52 papers that have together received 10.1k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (5 papers), Prostate Cancer Treatment and Research (4 papers), Genetic Associations and Epidemiology (4 papers), Genetic diversity and population structure (4 papers), Genomics and Rare Diseases (4 papers), Radiopharmaceutical Chemistry and Applications (4 papers), Genetic and phenotypic traits in livestock (2 papers) and Plant and animal studies (2 papers). The work is most often cited by research in Genetics (2.8k citations), Molecular Biology (4.4k citations), Plant Science (1.9k citations), Endocrinology (222 citations) and Cancer Research (592 citations). Shane McCarthy has collaborated with scholars based in United Kingdom, United States and Sweden. Frequent co-authors include Petr Danecek, James Bonfield, Thomas Keane, Martin Pollard, Valeriu Ohan, Andrew Whitwham, Jennifer Liddle, Robert M. Davies, John Marshall and Heng Li. Their work appears in journals such as Bioinformatics, GigaScience, Annals of Oncology, Genome Research and Genome biology.
Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.