Marc Lohse

78.4k citations

26 papers · 51.1k · 6 hit papers · h-index 24

Impact in

Endocrinology top 0.1%
Molecular Biology top 0.05%
- Genomics and Phylogenetic Studies
- Gut microbiota and health
- Photosynthetic Processes and Mechanisms

Papers in

Molecular Biology 17
- Photosynthetic Processes and Mechanisms 7
- Genomics and Phylogenetic Studies 6
- Gene expression and cancer classification 4
- Plant Gene Expression Analysis 2
Plant Science 12
- Plant nutrient uptake and metabolism 5
- Plant Molecular Biology Research 5
- Postharvest Quality and Shelf Life Management 2
- Polysaccharides and Plant Cell Walls 2

Co-authors: Björn Usadel (12 shared papers)Anthony Bolger (3 shared papers)Ralph Bock (5 shared papers)Oliver Drechsel (2 shared papers)Sabine Kahlau (2 shared papers)Mark Stitt (8 shared papers)Axel Nagel (4 shared papers)Alisdair R. Fernie (8 shared papers)
Journals: PLANT PHYSIOLOGY (6 papers)The Plant Journal (3 papers)BMC Plant Biology (2 papers)Plant Cell & Environment (2 papers)Nucleic Acids Research (2 papers)
Partner nations: Germany United States Brazil

In The Last Decade

Marc Lohse

26 papers receiving 50.7k citations

Marc Lohse's Hit Papers

6 papers align trajectories log scale

Trimmomatic: a flexible trimmer for Illumina sequence data 2014 · 44.3k citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2014 Bioinformatics
2013 Nucleic Acids Research
2013 Plant Cell & Environment
2012 Nucleic Acids Research
2008 The Plant Journal
2007 Current Genetics

Peers

Countries citing papers authored by Marc Lohse

Since Specialization

Citations

This map shows the geographic impact of Marc Lohse's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marc Lohse with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marc Lohse more than expected).

Fields of papers citing papers by Marc Lohse

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marc Lohse. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marc Lohse. The network helps show where Marc Lohse may publish in the future.

Co-authors

The 25 scholars most cited alongside Marc Lohse, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Marc Lohse Line = papers co-authored together Marc Lohse links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 26 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Trimmomatic: a flexible trimmer for Illumina sequence data Bioinformatics ·Anthony Bolger, Marc Lohse, Björn Usadel Hit paper breakdown →	2014	44315
2	OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets Nucleic Acids Research ·Marc Lohse, Oliver Drechsel, Sabine Kahlau, Ralph Bock Hit paper breakdown →	2013	1262
3	OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes Current Genetics ·Marc Lohse, Oliver Drechsel, Ralph Bock Hit paper breakdown →	2007	1000
4	Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta The Plant Journal ·Rainer Waadt, Lena K. Schmidt, Marc Lohse, Kenji Hashimoto, Ralph Bock, Jörg Kudla Hit paper breakdown →	2008	658
5	RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics Nucleic Acids Research ·Marc Lohse, Anthony Bolger, Axel Nagel, Alisdair R. Fernie, John E. Lunn, Mark Stitt, Björn Usadel Hit paper breakdown →	2012	647
6	A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize Plant Cell & Environment ·Björn Usadel, Fabien Porée, Axel Nagel, Marc Lohse, Angelika Czedik‐Eysenberg, Mark Stitt	2009	478
7	Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data Plant Cell & Environment ·Marc Lohse, Axel Nagel, Thomas Herter, Patrick May, Michael Schroda, Rita Zrenner, Takayuki Tohge, Alisdair R. Fernie, Mark Stitt, Björn Usadel Hit paper breakdown →	2013	468
8	Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions PLANT PHYSIOLOGY ·Sonia Osorio, Rob Alba, C. M. B. Damasceno, Gloria López‐Casado, Marc Lohse, María Inés Zanor, Takayuki Tohge, Björn Usadel, Jocelyn K. C. Rose, Zhangjun Fei, James J. Giovannoni, Alisdair R. Fernie	2011	287
9	Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic The Plant Journal ·Melanie Oey, Marc Lohse, Bernd Kreikemeyer, Ralph Bock	2008	272
10	Large‐scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi‐arid tropics of Asia and Africa Plant Biotechnology Journal ·Pavana J Hiremath, Andrew Farmer, Steven B. Cannon, Jimmy E. Woodward, Himabindu Kudapa, Reetu Tuteja, Ashish Kumar, (unknown), Benjamin Mulaosmanovic, Neha Gujaria, Laxmanan Krishnamurthy, Pooran M. Gaur, Polavarapu B. KaviKishor, Trushar Shah, R. Srinivasan, Marc Lohse, Yongli Xiao, Christopher D. Town, Douglas R. Cook, Gregory D. May, Rajeev K. Varshney	2011	238
11	RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility PLANT PHYSIOLOGY ·María Inés Zanor, Sonia Osorio, Adriano Nunes‐Nesi, Fernando Carrari, Marc Lohse, Björn Usadel, Christina Kühn, Wilfrid Bleiß, Patrick Giavalisco, Lothar Willmitzer, Ronan Sulpice, Yanhong Zhou, Alisdair R. Fernie	2009	229
12	UV-B Irradiation Changes Specifically the Secondary Metabolite Profile in Broccoli Sprouts: Induced Signaling Overlaps with Defense Response to Biotic Stressors Plant and Cell Physiology ·Inga Mewis, Monika Schreiner, Chau Nhi Nguyen, Angelika Krumbein, Christian Ulrichs, Marc Lohse, Rita Zrenner	2012	222
13	Arbuscule‐containing and non‐colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development The Plant Journal ·Nicole Gaude, Silvia Bortfeld, Nina Duensing, Marc Lohse, Franziska Krajinski	2011	215
14	Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process PLANT PHYSIOLOGY ·Katharine A. Howell, Reena Narsai, Adam Carroll, Aneta Ivanova, Marc Lohse, Björn Usadel, A. Harvey Millar, James Whelan	2008	213
15	Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis PLANT PHYSIOLOGY ·Marc Lohse, Adriano Nunes‐Nesi, Peter Krüger, Axel Nagel, Jan Hannemann, Federico M. Giorgi, Liam Childs, Sonia Osorio, Dirk Walther, Joachim Selbig, Nese Sreenivasulu, Mark Stitt, Alisdair R. Fernie, Björn Usadel	2010	100
16	Plastid production of protein antibiotics against pneumonia via a new strategy for high-level expression of antimicrobial proteins Proceedings of the National Academy of Sciences ·Melanie Oey, Marc Lohse, Lars B. Scharff, Bernd Kreikemeyer, Ralph Bock	2009	97
17	Antisense Inhibition of the 2-Oxoglutarate Dehydrogenase Complex in Tomato Demonstrates Its Importance for Plant Respiration and during Leaf Senescence and Fruit Maturation The Plant Cell ·Wagner L. Araújo, Takayuki Tohge, Sonia Osorio, Marc Lohse, Ilse Balbo, Ina Krahnert, Agata Sienkiewicz‐Porzucek, Björn Usadel, Adriano Nunes‐Nesi, Alisdair R. Fernie	2012	85
18	Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex Molecular Plant ·Takayuki Tohge, Federico Scossa, Regina Wendenburg, Pierre Frasse, Ilse Balbo, Mutsumi Watanabe, Saleh Alseekh, Sagar Sudam Jadhav, Jay C. Delfin, Marc Lohse, Patrick Giavalisco, Bjöern Usadel, Youjun Zhang, Jie Luo, Mondher Bouzayen, Alisdair R. Fernie	2020	71
19	Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine BMC Plant Biology ·Ana Rotter, Carlos Camps, Marc Lohse, Christian Kappel, S. Pilati, Matjaž Hren, Mark Stitt, Pierre Coutos‐Thévenot, Claudio Moser, Björn Usadel, Serge Delrot, Kristina Gruden	2009	44
20	Algorithm-driven Artifacts in median polish summarization of Microarray data BMC Bioinformatics ·Federico M. Giorgi, Anthony Bolger, Marc Lohse, Björn Usadel	2010	43

About Marc Lohse

Marc Lohse is a scholar working on Molecular Biology, Plant Science, Ecology, Biotechnology and Genetics, having authored 26 papers that have together received 51.1k indexed citations. Recurring topics across this work include Photosynthetic Processes and Mechanisms (7 papers), Genomics and Phylogenetic Studies (6 papers), Plant nutrient uptake and metabolism (5 papers), Plant Molecular Biology Research (5 papers), Gene expression and cancer classification (4 papers), Postharvest Quality and Shelf Life Management (2 papers), Plant Gene Expression Analysis (2 papers) and Polysaccharides and Plant Cell Walls (2 papers). The work is most often cited by research in Endocrinology (1.8k citations), Molecular Biology (24.4k citations), Plant Science (13.4k citations), Ecology (8.2k citations) and Molecular Medicine (1.5k citations). Marc Lohse has collaborated with scholars based in Germany, United States and Brazil. Frequent co-authors include Björn Usadel, Anthony Bolger, Ralph Bock, Oliver Drechsel, Sabine Kahlau, Mark Stitt, Axel Nagel, Alisdair R. Fernie, Rainer Waadt and Jörg Kudla. Their work appears in journals such as PLANT PHYSIOLOGY, The Plant Journal, BMC Plant Biology, Plant Cell & Environment and Nucleic Acids Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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In The Last Decade

Marc Lohse

Marc Lohse's Hit Papers

Peers

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Fields of papers citing papers by Marc Lohse

All Works

About Marc Lohse

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